Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_005904.1 Length=9463 Score E Sequences producing significant alignments: (Bits) Value seq4616 129 4e-26 >seq4616 Length=1066 Score = 129 bits (142), Expect = 4e-26 Identities = 235/343 (69%), Gaps = 6/343 (2%) Strand=Plus/Minus Query 8812 TGCTAAACGGTTTTATGGTTTGGGCATTGGATAATGGAACTTCACCAAATATTTCAGGAA 8871 ||||||| ||||| ||||||||| | || ||||| || || ||| | || || || Sbjct 878 TGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCTGGTG 819 Query 8872 CTTGGTTGATGATGGATGGAGAGAAACAAAAAGAGTATCCACTCGAGCC---GATTGTCA 8928 ||| | ||||||||||| || | ||| || |||||| || |||| ||||| Sbjct 818 TCTGGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTGATTG--- 762 Query 8929 AACATGCACAACCAACATTGCGGCAAATCATGATGCATTTTAGCGATGCCGCAACAGCGT 8988 | ||||| || |||| ||||||| ||| || ||||| | || ||| ||| | Sbjct 761 AGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCAT 702 Query 8989 ACATTGTGTTACGCAACACGAAAGGAAGATATATGCCTGGGTATGGTCTGAAAAGAAATT 9048 |||||| | | || | | | || || ||||| ||||||| | || ||||||| Sbjct 701 ACATTGCGAAGAGAAATGCTACTGAGAGGTACATGCCGCGGTATGGAATCAAGAGAAATT 642 Query 9049 TAAATGACATGAACCTAGCGCCATACGCATTTGACTTCTACGAAATAACATCAGAGACGC 9108 | | |||||| | ||| || |||||| || |||||||| || | | || | || | Sbjct 641 TGACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAACAC 582 Query 9109 CTAACAGAGCACGTGAAGTGCATATGCAGATGAAAGCTGCAGC 9151 || | || || || |||| || ||||||||||| |||||||| Sbjct 581 CTGATAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGC 539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30160371395792