Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_006262.1 Length=10035 Score E Sequences producing significant alignments: (Bits) Value seq4616 206 2e-49 >seq4616 Length=1066 Score = 206 bits (228), Expect = 2e-49 Identities = 341/487 (70%), Gaps = 10/487 (2%) Strand=Plus/Minus Query 9172 CTTAGCTTAGACCATTTACTCGAGTACAAACCTAATCAAGTTGATCTGTTTAACACTCGA 9231 |||| ||| | ||| | || ||||||| || | ||| |||| | | ||||||||| Sbjct 1017 CTTAATTTAAATCATCTTCTTCAGTACAATCCGCAACAAATTGACATTTCTAACACTCGT 958 Query 9232 GCAACAAAAACACAGTTTGAATCATGGTACAGCGCAGTTAAAGTTGAATACGATCTTAAC 9291 || || | |||| ||||| ||||| | ||| | ||| || | ||||| Sbjct 957 GCCACTCATTCACAATTTGAGAAGTGGTATGAGGGAGTGAGGAATGATTATGGCCTTAAT 898 Query 9292 GATGAGCAAATGGGTGTGATTATGAATGGTTTTATGGTTTGGTGTATCGATAACGGTACA 9351 ||| | ||||| ||||| | |||||||| ||||||||||||||||| || |||||| Sbjct 897 GATAATGAAATGCAAGTGATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACA 838 Query 9352 TCTCCAGATGTCAATGGAGTTTGGGTGATGATGGATGGGGAAGAGCAAGTTGAGTATCCA 9411 |||||||| | ||| || ||||| ||||||||||||||| |||||||| |||||| Sbjct 837 TCTCCAGACATATCTGGTGTCTGGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCA 778 Query 9412 TTAAAGCCAATTGTTGAAAATGCGAAACCAACTTTAAGACAAATCATGCACCATTTCTCA 9471 | ||||| | |||| |||| | || | || || ||||| ||| || || Sbjct 777 ATCAAGCCTTTGATTGAGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGT 718 Query 9472 GACGCAGCAGAAGCATATATTGAAATGAGAAA--CT-CTGAAAGTCCGTATATGCCTAGA 9528 |||| ||||||||||| |||| | |||||| || |||| || ||| ||||| | Sbjct 717 AACGCGGCAGAAGCATACATTGCGAAGAGAAATGCTACTGAGAG---GTACATGCCGCGG 661 Query 9529 TACGGATTACTAAGAAATTTGAGAGACAGGGAATTAGCACGCTATGCTTTTGACTTTTAT 9588 || ||| | |||||||||| |||| | || | || ||||| ||||| ||| Sbjct 660 TATGGAATCAAGAGAAATTTGACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTAT 601 Query 9589 GAGGTTACTTCCAAAACACCTAATAGGGCAAGAGAAGCAATAGCA--CAAATGAAGGCCG 9646 ||||| | ||| ||||||||| ||||||| | ||||| | || || |||||||| | Sbjct 600 GAGGTGAATTCGAAAACACCTGATAGGGCTCGCGAAGC--TCACATGCAGATGAAGGCTG 543 Query 9647 CAGCTCT 9653 |||| || Sbjct 542 CAGCGCT 536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 31990405599504