Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_007147.1 Length=9611 Score E Sequences producing significant alignments: (Bits) Value seq4616 147 1e-31 >seq4616 Length=1066 Score = 147 bits (162), Expect = 1e-31 Identities = 282/412 (68%), Gaps = 4/412 (1%) Strand=Plus/Minus Query 8831 TTTGATAGATGGTATGATGCTGTCAAGAATGAGTATGAAGTAGACGATACACAGATGACA 8890 ||||| | |||||||| | || | |||||| |||| | | |||| | ||| | Sbjct 942 TTTGAGAAGTGGTATGAGGGAGTGAGGAATGATTATGGCCTTAATGATAATGAAATGCAA 883 Query 8891 GTAATCATGAGTGGACTAATGGTATGGTGCATAGAGAATGGTTGCTCACCTAACATAAAT 8950 || || | | ||| | ||||| ||||| || ||||||||| || || ||||| | Sbjct 882 GTGATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCT 823 Query 8951 GGAGTGTGGACAATGATGGATGGAGAAGAACAAAG--GACTTTTCCACTTAAACCTGTCA 9008 || || ||| ||||||||||| ||| | | ||| || || |||| | || ||| | | Sbjct 822 GGTGTCTGGGTTATGATGGATGGGGAA-ACCCAAGTTGA-TTATCCAATCAAGCCTTTGA 765 Query 9009 TTGAAAATGCATCACCCACATTTCGACAAATAATGCACCATTTTAGTGATGCAGCTGAAG 9068 |||| |||| | || ||||| | ||||| ||| || |||||| | || || |||| Sbjct 764 TTGAGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAG 705 Query 9069 CCTACATTGAATTCCGTAACGCAACGGAAAGATATATGCCACGATATGGTCTTCAGCGAA 9128 | ||||||| | || || || || || || ||||| || ||||| | || ||| Sbjct 704 CATACATTGCGAAGAGAAATGCTACTGAGAGGTACATGCCGCGGTATGGAATCAAGAGAA 645 Query 9129 ACTTGACCGACTATAGCTTAGCTCGATATGCTTTTGACTTTTACGAGATCACATCTCGCA 9188 | ||||| ||| |||| | ||| |||| ||||| ||||| || ||| | | || | Sbjct 644 ATTTGACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAA 585 Query 9189 CAACAGCACGAGCTAAGGAAGCCCACATGCAGATGAAAGCAGCAGCAGTGCG 9240 || | | | ||| ||||| |||||||||||||| || ||||| |||| Sbjct 584 CACCTGATAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCTGCG 533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30633876749200