Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_007180.1 Length=9723 Score E Sequences producing significant alignments: (Bits) Value seq4616 203 2e-48 >seq4616 Length=1066 Score = 203 bits (224), Expect = 2e-48 Identities = 364/529 (69%), Gaps = 2/529 (0%) Strand=Plus/Minus Query 8918 CCACAGCAAACTGATATATATAACACGCGTGCAACACAAACACAATTCGCTGCTTGGTAT 8977 || || |||| ||| || | |||||| ||||| || || ||||||| | |||||| Sbjct 987 CCGCAACAAATTGACATTTCTAACACTCGTGCCACTCATTCACAATTTGAGAAGTGGTAT 928 Query 8978 GATGGAGTTAAGCAGGATTACGAGCTCGAAGATGATCAAATGCAGATCGTATTAAATGGA 9037 || ||||| | | | ||||| | || | ||| || ||||||| | | ||||||| Sbjct 927 GAGGGAGTGAGGAATGATTATGGCCTTAATGATAATGAAATGCAAGTGATGCTAAATGGT 868 Query 9038 TTAATGGTTTGGTGTATAGAGAATGGCACTTCACCAAACTTGAATGGGATGTGGGTGATG 9097 || |||||||||||||| |||||||| || || ||| || | ||| | ||||| ||| Sbjct 867 TTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCTGGTGTCTGGGTTATG 808 Query 9098 ATGGATGAGGATAAGCAGGTTGAATTTCCAATAAAACCACTTCTTGATCATGCGAAACCA 9157 ||||||| ||| | || ||||| | |||||| || || | |||| ||||| | || Sbjct 807 ATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTGATTGAGCATGCTACTCCG 748 Query 9158 ACATTTCGACAGATAATGGCACACTTTTCTGAACTAGCAGAGGCGTACATTATTAAACGC 9217 ||||| | || || ||||| |||||| | | ||||| || |||||| || | Sbjct 747 TCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCATACATTGCGAAGAGA 688 Query 9218 AACATAACAAAACCGTATATGCCACGGTATGCCTTAAAAAGAAATTTAACCGACATGAGC 9277 || || | ||| ||||| ||||||| | || |||||||| || ||||| ||| Sbjct 687 AATGCTACTGAGAGGTACATGCCGCGGTATGGAATCAAGAGAAATTTGACTGACATTAGC 628 Query 9278 CTCGCACAGTATGCGTTTGATTTCTTAGAGATCACATCTAGAACACCAGCTAGAGCACGC 9337 ||||| || || || || |||| ||| | | || | |||||| | ||| || ||| Sbjct 627 CTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAACACCTGATAGGGCTCGC 568 Query 9338 GAGGCACAAGCACAAATGAAGGCAGCGGCATTAAAGAATGCGCGTACAAGAATGTTTGGC 9397 || || || || |||||||| || || | || | || | ||||||||| Sbjct 567 GAAGCTCACATGCAGATGAAGGCTGCAGCGCTGCGAAACACCAGTCGCAAAATGTTTGGT 508 Query 9398 TTGGATGGTAGTG-TCGGAACAACGGAGGAGGACACGGAAAGGCACACA 9445 |||| || |||| | | ||||| ||| || ||||||| || |||||| Sbjct 507 ATGGACGGCAGTGTTAGTAACAA-GGAAGAAAACACGGAGAGACACACA 460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30992205124752