Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_007216.1 Length=9695 Score E Sequences producing significant alignments: (Bits) Value seq4616 167 1e-37 >seq4616 Length=1066 Score = 167 bits (184), Expect = 1e-37 Identities = 330/486 (68%), Gaps = 8/486 (2%) Strand=Plus/Minus Query 8829 CTTAATTTACCACACCTTTTGGAATACAAGCCTAGACAAGTTGATCTTTTTAATACTCGC 8888 ||||||||| || ||| | | ||||| || |||| |||| ||| ||| ||||| Sbjct 1017 CTTAATTTAAATCATCTTCTTCAGTACAATCCGCAACAAATTGACATTTCTAACACTCGT 958 Query 8889 GCAACAAAGACTCAGTTTGATGCGTGGTATGATGCAGTGAAAGGTGAGTATGAGCTGGAT 8948 || || | | || ||||| ||||||||| | ||||| ||| |||| || || Sbjct 957 GCCACTCATTCACAATTTGAGAAGTGGTATGAGGGAGTGAGGAATGATTATGGCCTTAAT 898 Query 8949 GATGAGCAAATGAGTGTGGTGATGAATGGATTCATGGTCTGGTGTATTGATAATGGGTCG 9008 ||| | ||||| ||| || | ||||| || ||||| |||||||| || ||||| | Sbjct 897 GATAATGAAATGCAAGTGATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACA 838 Query 9009 TCCCCAGATGTGAATGGTGTTTGGGTTATGATGGATGGAGAACAACAAGTTGAATATCCA 9068 || ||||| | |||||| ||||||||||||||||| ||| |||||||| |||||| Sbjct 837 TCTCCAGACATATCTGGTGTCTGGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCA 778 Query 9069 CTTAAACCCATAGTTGAAAATGCCAAGCCAACTCTGAGACAAATCATGCATCATTTCTCA 9128 | || || | |||| |||| | || | | || ||||| ||| ||| || Sbjct 777 ATCAAGCCTTTGATTGAGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGT 718 Query 9129 GATGCAGCTGAGGCATACATTGAAATGAGGAATG---CTGA-AGGACCATATATGCCTAG 9184 | || || || |||||||||| | ||| |||| |||| ||| || ||||| | Sbjct 717 AACGCGGCAGAAGCATACATTGCGAAGAGAAATGCTACTGAGAGG----TACATGCCGCG 662 Query 9185 GTATGGTCTGTTAAGGAATTTGAGGGACAGGGACTTAGCTCGCTATGCTTTTGATTTTTA 9244 |||||| | || ||||||| |||| | | ||| | || ||||| || || || Sbjct 661 GTATGGAATCAAGAGAAATTTGACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTA 602 Query 9245 TGAAGTCACTTCAAAGACTCCAAATAGAGCAAGAGAAGCAATAGCGCAAATGAAAGCTGC 9304 ||| || | ||| || || || |||| || | ||||| ||| ||||| ||||| Sbjct 601 TGAGGTGAATTCGAAAACACCTGATAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGC 542 Query 9305 AGCCCT 9310 ||| || Sbjct 541 AGCGCT 536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30902623030864