Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_007728.1 Length=10046 Score E Sequences producing significant alignments: (Bits) Value seq4616 150 1e-32 >seq4616 Length=1066 Score = 150 bits (166), Expect = 1e-32 Identities = 394/594 (66%), Gaps = 8/594 (1%) Strand=Plus/Minus Query 9187 ATCATTTACTTGAGTATGCACCAAATCAAGTTGATCTCTTTAATACCAGAGCTACAAAGT 9246 ||||| | ||| |||| || | ||| |||| | | ||| || | || || | | Sbjct 1007 ATCATCTTCTTCAGTACAATCCGCAACAAATTGACATTTCTAACACTCGTGCCACTCATT 948 Query 9247 CACAATTTGAATCATGGTATTCAGCAGTCCAAAGAGAATATGAGCTGGATGACAATCAAA 9306 |||||||||| |||||| | ||| | || |||| || |||| ||| ||| Sbjct 947 CACAATTTGAGAAGTGGTATGAGGGAGTGAGGAATGATTATGGCCTTAATGATAATGAAA 888 Query 9307 TGAGCGTCATCATGAATGGTTTCATGGTGTGGTGCATTGACAATGGCACTTCACCAAATG 9366 || || || | |||||||| ||||| ||||| || || ||||| || || ||| | Sbjct 887 TGCAAGTGATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACA 828 Query 9367 TTAATGGCACATGGGTGATGATGGACGGAGAAGGACAAATTGAATACCCATTGAAGCCGT 9426 | ||| ||||| |||||||| || ||| ||| |||| || ||| | ||||| | Sbjct 827 TATCTGGTGTCTGGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTT 768 Query 9427 TAGTTGAAAATGCCCAGCCAACATTGAGACAAATTATGCATCACTTTTCAGATGCGGCTG 9486 | |||| |||| || |||| || ||||||||| ||||||| | ||||| | Sbjct 767 TGATTGAGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAG 708 Query 9487 AGGCATACATTGAGATGAGAAATTCCAAAGAGCCGTATATGCCTAGATATGGTACTCTGA 9546 | |||||||||| || ||||||| | | ||| ||| ||||| | ||||| | || Sbjct 707 AAGCATACATTGCGAAGAGAAATGCTACTGAGAGGTACATGCCGCGGTATGGAATCAAGA 648 Query 9547 GGAATTTGAGGGACTTGAGTTTGGCGAGGTATGCTTTTGATTTCTATGAAGTAACCTCCA 9606 | ||||||| ||| | || | || || || ||||| || |||||||| || | || | Sbjct 647 GAAATTTGACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGA 588 Query 9607 AGACGCCTAACAGAGCAAGAGAAGCGGTAGCA--CAAATGAAAGCCGCTGCCCTCGCG-A 9663 | || ||| | || || | ||||| | || || ||||| || || || || ||| | Sbjct 587 AAACACCTGATAGGGCTCGCGAAGC--TCACATGCAGATGAAGGCTGCAGCGCT-GCGAA 531 Query 9664 ACGTTTCTACTAGGTTGTTTGGCCTGGATGGAAATGTTTCAACCACTGGCGAGAACACTG 9723 || | | ||||||| |||| || | |||| | || | || ||||| | Sbjct 530 ACACCAGTCGCAAAATGTTTGGTATGGACGGCAGTGTTAGTAACAAGGAAGAAAACACGG 471 Query 9724 AAAGGCATACTGCACGGGACGTCAATCAGA-ACATGCACACCCTTTTGGGTATG 9776 | || || || | || |||||| ||| |||||||| | || |||||||| Sbjct 470 AGAGACACACAGTGGAAGATGTCAAT-AGAGACATGCACTCTCTCCTGGGTATG 418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 32025598564960