Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_007913.1 Length=9544 Score E Sequences producing significant alignments: (Bits) Value seq4616 215 3e-52 >seq4616 Length=1066 Score = 215 bits (238), Expect = 3e-52 Identities = 405/594 (68%), Gaps = 6/594 (1%) Strand=Plus/Minus Query 8820 CATCTTGCCCAGTACAATCCAGAGCAAACGGATTTGGCAAATACGAGAGCAACACAGAAT 8879 |||||| ||||||||||| | |||| || | | || || | || || || Sbjct 1005 CATCTTCTTCAGTACAATCCGCAACAAATTGACATTTCTAACACTCGTGCCACTCATTCA 946 Query 8880 CAATTTGCCCGTTGGTTTGATGGTGTCAAAGGGGACTATGGATTGAATGATGCAGAGATG 8939 ||||||| |||| ||| || || | || ||||| | |||||| || ||| Sbjct 945 CAATTTGAGAAGTGGTATGAGGGAGTGAGGAATGATTATGGCCTTAATGATAATGAAATG 886 Query 8940 GACGTCATGTTAAATGGCCTTGTTGTCTGGTGCATCGAGAATGGGACCTCTCCAAACATA 8999 | || ||| ||||||| | | || ||||| ||||||||||| || |||||| ||||| Sbjct 885 CAAGTGATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATA 826 Query 9000 AACGGATTGTGGACTATGATGGATGGTGAGGAGCAAATTGAATATCCAATCAAACCATTA 9059 || | ||| |||||||||||| || ||| |||| ||||||||||| || || Sbjct 825 TCTGGTGTCTGGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTG 766 Query 9060 ATAGATCATGCGTCACCCACATTCCGTCAAATTATGGCGCATTTCAGTGACATTGCCGAG 9119 || || ||||| | || |||| | ||||||||||| || || ||| || || || Sbjct 765 ATTGAGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAA 706 Query 9120 GCGTATATAGAAAAACGCAATTTTGATGGTAAGTATATGCCACGGTACGGTATACTCAGA 9179 || || || | || | ||| | || | ||| ||||| ||||| || || ||| Sbjct 705 GCATACATTGCGAAGAGAAATGCTACTGAGAGGTACATGCCGCGGTATGGAATCAAGAGA 646 Query 9180 AACTTGAACGACTTCAGTCTTGCGAGATATGCATTTGATTTTTATGAAATGACATCCAAG 9239 || |||| ||| | || || || ||||| || || || || ||||| ||| || || Sbjct 645 AATTTGACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAA 586 Query 9240 ACACCCAACAGGGCAAGAGAGGCTCACTTGCAGATGAAAGCATCCGCCCTGCGAAGCGCG 9299 ||||| | ||||| | || |||||| |||||||||| || | || ||||||| | Sbjct 585 ACACCTGATAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCTGCGAAAC--- 529 Query 9300 AACACGCGC---ATGTTTGGTTTAGACGGGAAAGTTACAACAAAGGAAGAGGACACAGAG 9356 | || ||| ||||||||| | ||||| | |||| | |||||||| |||| ||| Sbjct 528 ACCAGTCGCAAAATGTTTGGTATGGACGGCAGTGTTAGTAACAAGGAAGAAAACACGGAG 469 Query 9357 AGACATACAGCTGAAGATGTGACGCGCAATTTGCACACTTTGATGGGTGTGCGC 9410 ||||| |||| |||||||| | | | ||||| || | ||||| ||||| Sbjct 468 AGACACACAGTGGAAGATGTCAATAGAGACATGCACTCTCTCCTGGGTATGCGC 415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30419519595968