Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_008028.1 Length=9548 Score E Sequences producing significant alignments: (Bits) Value seq4616 183 2e-42 >seq4616 Length=1066 Score = 183 bits (202), Expect = 2e-42 Identities = 362/530 (68%), Gaps = 8/530 (2%) Strand=Plus/Minus Query 8811 ACATTTCGAACACACGTGCAAGTTTGGCACAATTTAACACATGGTTTGAGGCAGTTCGAG 8870 ||||||| ||||| ||||| | | |||||||| | | |||| ||||| ||| | Sbjct 974 ACATTTCTAACACTCGTGCCACTCATTCACAATTTGAGAAGTGGTATGAGGGAGTGAGGA 915 Query 8871 ACGCTTATGATGTGAAAGATGAGGATATGACGGTCCTCATGAATGGTTTGATGGTTTGGT 8930 | | ||||| | || ||| | || ||| || | | ||||||||||||||||||| Sbjct 914 ATGATTATGGCCTTAATGATAATGAAATGCAAGTGATGCTAAATGGTTTGATGGTTTGGT 855 Query 8931 GCATCGAGAATGGGACTTCACCCAATATCAATGGAAATTGGTATATGATGGACGGTGATG 8990 | ||||||||||| || || || | || ||| ||| ||||||||| || || Sbjct 854 GTATCGAGAATGGTACATCTCCAGACATATCTGGTGTCTGGGTTATGATGGATGGGGAAA 795 Query 8991 AGCAATTGGAGTACCCACTCAAGCCAGTTGTTGAAAACGCCAAGCCAACATTGCGGCAAA 9050 ||| | || || ||| ||||||| | |||| | || | || |||| |||||| Sbjct 794 CCCAAGTTGATTATCCAATCAAGCCTTTGATTGAGCATGCTACTCCGTCATTTAGGCAAA 735 Query 9051 TCATGGCGCATATGAGCAATATAGCCGAAGCCTATATTGAAATGCGCAA--CT-CTGAGA 9107 | ||||| || | || || || ||||| || |||| | | | || || |||||| Sbjct 734 TTATGGCTCACTTTAGTAACGCGGCAGAAGCATACATTGCGAAGAGAAATGCTACTGAGA 675 Query 9108 GACCATACATGCCGCGTTACGGTCTCCAACGAAATTTGACAGATATGAGCTTAGCGCGTT 9167 | ||||||||||| || || || | |||||||||| || || ||| | || | | Sbjct 674 GG---TACATGCCGCGGTATGGAATCAAGAGAAATTTGACTGACATTAGCCTCGCTAGAT 618 Query 9168 ATGCCTTTGATTTCTATGAAATCACATCCAAAACGCCAGGGAGAGCAAGGGAGGCTCATA 9227 | || || || |||||||| | | || ||||| || | || || | || ||||| | Sbjct 617 ACGCTTTCGACTTCTATGAGGTGAATTCGAAAACACCTGATAGGGCTCGCGAAGCTCACA 558 Query 9228 TCCAGATGAAGGCAGCAGCCCTCCGAAATGCCAG-CACACATCTATTTGGTTTAGATGGG 9286 | ||||||||||| ||||| || ||||| |||| | || | | |||||| | || || Sbjct 557 TGCAGATGAAGGCTGCAGCGCTGCGAAACACCAGTCGCA-AAATGTTTGGTATGGACGGC 499 Query 9287 AATGTTGGGAATGCTGCAGAGAACACAGAAAGGCACACAACGGATGATGT 9336 | |||| | || | ||| ||||| || || |||||| ||| ||||| Sbjct 498 AGTGTTAGTAACAAGGAAGAAAACACGGAGAGACACACAGTGGAAGATGT 449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30432317037952