Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_008393.1 Length=9890 Score E Sequences producing significant alignments: (Bits) Value seq4616 188 4e-44 >seq4616 Length=1066 Score = 188 bits (208), Expect = 4e-44 Identities = 391/576 (68%), Gaps = 6/576 (1%) Strand=Plus/Minus Query 8795 TAAAGGGAAGACTGCTTTGAATCTGGATCACTTGCTCGAGTACGAACCACAACAGATAGA 8854 ||| |||||||||| | ||| | |||| | || ||||| | || ||||| || || Sbjct 1033 TAAGGGGAAGACTGTCCTTAATTTAAATCATCTTCTTCAGTACAATCCGCAACAAATTGA 974 Query 8855 CATATCCAACACTCGAGCAACTCAGTCACAATTTGATACATGGTTTAAAGCAGTTCAAAC 8914 ||| || |||||||| || ||||| ||||||||||| | |||| | | | ||| | Sbjct 973 CATTTCTAACACTCGTGCCACTCATTCACAATTTGAGAAGTGGTATGAGGGAGTGAGGAA 914 Query 8915 AGCATACGACATCACTGAAGATGAAATGCCTACGGTCATGAATGGATTGATGGTTTGGTG 8974 | || | | | | ||| ||||||||| | | | ||||| |||||||||||||| Sbjct 913 TGATTATGGCCTTAATGATAATGAAATGCAAGTGATGCTAAATGGTTTGATGGTTTGGTG 854 Query 8975 CATTGAGAATGGTACCTCACCAAACATTAATGGTGTATGGGTGATGATGGATGGAGAAGA 9034 || ||||||||||| || ||| |||| |||||| ||||| ||||||||||| ||| Sbjct 853 TATCGAGAATGGTACATCTCCAGACATATCTGGTGTCTGGGTTATGATGGATGGGGAAAC 794 Query 9035 ACAAGTCGAATATCCATTAAAACCCATCGTGGAAAACGCCAAGCCAACTTTCAGGCAGAT 9094 ||||| || |||||| | || || | | || | || | || | || ||||| || Sbjct 793 CCAAGTTGATTATCCAATCAAGCCTTTGATTGAGCATGCTACTCCGTCATTTAGGCAAAT 734 Query 9095 CATGGCACATTTCTCTGATGTTGCAGAAGCGTATATAGAGATGCGCAACAAGAAAGAACC 9154 ||||| || || | | | |||||||| || || | || | | || | || Sbjct 733 TATGGCTCACTTTAGTAACGCGGCAGAAGCATACATTGCGAAGAGAAATGCTACTGAGAG 674 Query 9155 ATACATGCCACGATATGGTTTGATAAGAAATCTACGGGATGTTAGTCTTGCACGCTATGC 9214 |||||||| || ||||| | | |||||| | || |||| || || | || || Sbjct 673 GTACATGCCGCGGTATGGAATCAAGAGAAATTTGACTGACATTAGCCTCGCTAGATACGC 614 Query 9215 ATTTGACTTCTATGAAATAACATCTCGTACACCGTCAAGAGCACGTGAAGCACATATTCA 9274 || ||||||||||| | | || ||||| || || || ||||| || || || Sbjct 613 TTTCGACTTCTATGAGGTGAATTCGAAAACACCTGATAGGGCTCGCGAAGCTCACATGCA 554 Query 9275 AATGAAAGCAGCAGCGCT-CAAGTCAGTGCAGAC-TAGGATGTTTGGTCTGGATGGTGGC 9332 ||||| || |||||||| | | || ||| | | ||||||||| |||| || | Sbjct 553 GATGAAGGCTGCAGCGCTGCGAAACA--CCAGTCGCAAAATGTTTGGTATGGACGGCAGT 496 Query 9333 ATCAGTACACAA-GAGGAGAACACAGAGAGGCACAC 9367 | |||| |||| || || ||||| ||||| ||||| Sbjct 495 GTTAGTA-ACAAGGAAGAAAACACGGAGAGACACAC 461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 31526498327584