Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_009741.1 Length=9804 Score E Sequences producing significant alignments: (Bits) Value seq4616 152 3e-33 >seq4616 Length=1066 Score = 152 bits (168), Expect = 3e-33 Identities = 239/341 (70%), Gaps = 6/341 (2%) Strand=Plus/Minus Query 8962 AATGGCCTGATGGTTTGGTGTATTGAGAATGGCACCTCACCAAATTTGAATGGTGAGTGG 9021 ||||| |||||||||||||||| |||||||| || || ||| | | ||||| ||| Sbjct 873 AATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCTGGTGTCTGG 814 Query 9022 GTGATGATGGATGGTGAGGAACAAGTCACATACCCACTAAAACCAATAATTGAGAACGCT 9081 || ||||||||||| || ||||| || ||| | || || | |||||| | ||| Sbjct 813 GTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTGATTGAGCATGCT 754 Query 9082 AAGCCATCATTTCGACAAATCATGCATCACTTCTCAGATGCGGCTGAAGCGTATATTGAA 9141 | || |||||| | ||||| ||| |||||| | ||||| ||||| || |||| Sbjct 753 ACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCATACATTGCG 694 Query 9142 ATGAGAAA---TAGAGAGAAGCCATACATGCCTCGGTATGGCTTGATCAGAAATTTGAGG 9198 | |||||| || |||| | |||||||| |||||||| | | |||||||||| Sbjct 693 AAGAGAAATGCTACTGAGAGG---TACATGCCGCGGTATGGAATCAAGAGAAATTTGACT 637 Query 9199 GACATGTCGCTAGCCAGGTATGCCTTTGACTTCTATGAGATTAATTCGCGCACTCCAGCG 9258 ||||| || || || || || || |||||||||||| | |||||| || || | Sbjct 636 GACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAACACCTGAT 577 Query 9259 CGTGCTCGTGAAGCGATTGTGCAAATGAAAGCGGCTGCCCT 9299 | ||||| ||||| |||| ||||| || || || || Sbjct 576 AGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCT 536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 31251353324928