Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_009742.1 Length=9689 Score E Sequences producing significant alignments: (Bits) Value seq4616 179 2e-41 >seq4616 Length=1066 Score = 179 bits (198), Expect = 2e-41 Identities = 245/341 (72%), Gaps = 6/341 (2%) Strand=Plus/Minus Query 8967 AATGGTTTCATGGTCTGGTGTATTGAAAATGGAACTTCACCAGATATTAATGGTGTGTGG 9026 |||||||| ||||| |||||||| || ||||| || || ||||| || |||||| ||| Sbjct 873 AATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCTGGTGTCTGG 814 Query 9027 GTAATGATGGACGGAGATGAACAAGTTGAATACCCATTGAAACCAATGGTTGAGAATGCA 9086 || |||||||| || || |||||||| || ||| | || || || ||||| |||| Sbjct 813 GTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTGATTGAGCATGCT 754 Query 9087 AAGCCGACATTGAGACAAATCATGCATCATTTCTCAGATGCGGCTGAAGCATACATTGAA 9146 | ||| |||| || ||||| ||| ||| || | ||||| ||||||||||||| Sbjct 753 ACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCATACATTGCG 694 Query 9147 ATGAGGAATTCT---GAGGGATTGTACATGCCTAGGTATGGTCTCCTTAGAAACCTGAGG 9203 | ||| ||| || ||| | ||||||||| ||||||| || ||||| ||| Sbjct 693 AAGAGAAATGCTACTGAGAG---GTACATGCCGCGGTATGGAATCAAGAGAAATTTGACT 637 Query 9204 GATAAGAGTCTGGCGCGATATGCTTTCGATTTCTATGAGGTGAACTCTAAGACGTCGGAC 9263 || | || || || |||| |||||||| |||||||||||||| || || || | || Sbjct 636 GACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAACACCTGAT 577 Query 9264 AGAGCTAAAGAAGCTGTCACACAAATGAAGGCAGCCGCCCT 9304 || ||| |||||| || || |||||||| || || || Sbjct 576 AGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCT 536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30883426867888