Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_009744.1 Length=9659 Score E Sequences producing significant alignments: (Bits) Value seq4616 241 8e-60 >seq4616 Length=1066 Score = 241 bits (266), Expect = 8e-60 Identities = 401/578 (69%), Gaps = 6/578 (1%) Strand=Plus/Minus Query 8775 AGTACAAACCGGATCAAATTCACTTAAGCAATGCTCGAGCTCTTAACTCACAATTTCAAT 8834 ||||||| ||| | |||||| || | || |||| || | | ||||||||| | Sbjct 995 AGTACAATCCGCAACAAATTGACATTTCTAACACTCGTGCCACTCATTCACAATTTGAGA 936 Query 8835 CTTGGTATGATGGAGTTAAGAATGATTATGATGTGGATGACGAGCAAATGAAAATTATAA 8894 |||||||| ||||| | ||||||||||| | |||| | ||||| || | || Sbjct 935 AGTGGTATGAGGGAGTGAGGAATGATTATGGCCTTAATGATAATGAAATGCAAGTGATGC 876 Query 8895 TGAATGGCTTGATGGTCTGGTGCATTGAAAATGGCACATCGCCAAACATTAATGGCATGT 8954 | ||||| |||||||| ||||| || || ||||| ||||| ||| |||| ||| | | Sbjct 875 TAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCTGGTGTCT 816 Query 8955 GGGTTATGATTGATGGAGAGGAACAAGTTGAATATCCAATTAAACCATTGATCGACCATG 9014 |||||||||| ||||| || |||||||| |||||||| || || ||||| || |||| Sbjct 815 GGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTGATTGAGCATG 756 Query 9015 CCAAGCCTTCATTCAGACAGATAATGGCGCACTTTAGCAATCTTGCTGAAGCGTACATTG 9074 | | || ||||| || || || ||||| |||||||| || || ||||| ||||||| Sbjct 755 CTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCATACATTG 696 Query 9075 AAAGGCGCAA---TTCTGAGAAACCATACATGCCAAGGTATGGTCTTCAAAGAAATCTTA 9131 | | | || | |||||| |||||||| ||||||| | | |||||| | | Sbjct 695 CGAAGAGAAATGCTACTGAGA---GGTACATGCCGCGGTATGGAATCAAGAGAAATTTGA 639 Query 9132 CCGATATGTCACTTGCGCGCTATGCCTTTGATTTCTATGAAATGACATCAAAGACTCCCA 9191 | || || || || | || || || || |||||||| ||| || || || || Sbjct 638 CTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAACACCTG 579 Query 9192 GCCGAGCACGTGAAGCTCACATTCAAATGAAAGCAGCAGCTCTACGCAATGCTAACAATA 9251 | || || ||||||||||| || ||||| || ||||| || || || | | | Sbjct 578 ATAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCTGCGAAACACCAGTCGCA 519 Query 9252 GGATGTTCGGTTTGGACGGTAAGGTAGGCACTCAGGAGGAAGATACGGAGCGGCACACAG 9311 ||||| ||| ||||||| | || | | |||| ||| | |||||| | ||||||| Sbjct 518 AAATGTTTGGTATGGACGGCAGTGTTAGTAACAAGGAAGAAAACACGGAGAGACACACAG 459 Query 9312 CAGAGGATGTAAATAGGAACATGCACAACCTGCTGGGT 9349 || ||||| ||||| |||||||| || |||||| Sbjct 458 TGGAAGATGTCAATAGAGACATGCACTCTCTCCTGGGT 421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30787446053008