Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_009745.1 Length=9711 Score E Sequences producing significant alignments: (Bits) Value seq4616 152 3e-33 >seq4616 Length=1066 Score = 152 bits (168), Expect = 3e-33 Identities = 315/463 (68%), Gaps = 18/463 (4%) Strand=Plus/Minus Query 9041 TGGTTTGATGGTGTGGTGCATAGAGAATGGGACATCACCAAATTTAAATGGTACATGGAG 9100 |||||||||||| ||||| || |||||||| ||||| ||| | || |||| ||| Sbjct 871 TGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCTGGTGTCTGGGT 812 Query 9101 TATGATGGACAAGGGTGAGCAACTAGTCTACCAGTTAAAGCCCATTATTGAGAACGCTCA 9160 ||||||||| || ||| | | || | | ||||| | |||||| | ||| Sbjct 811 TATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTGATTGAGCATGCTAC 752 Query 9161 GCCTACTTTTCGGCAAATTATGGCACATTTTTCTGATGCCGCTGAGGCATACATAACAAT 9220 || | ||| ||||||||||||| || ||| | | || || || |||||||| | | Sbjct 751 TCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCATACATTGCGAA 692 Query 9221 GCGTAATGTCACGGAGAGATATATGCCTAGGTGGGGAGCACTTAGAGGA--TTGAATGAC 9278 | | |||| || ||||| || ||||| ||| ||| | |||| | |||| |||| Sbjct 691 GAGAAATGCTACTGAGAGGTACATGCCGCGGTATGGA--ATCAAGAGAAATTTGACTGAC 634 Query 9279 ATAAGCTTAGCCCGATATGCATTTGATTTTTACGTAGTCACATCAAAAACTACGAACAGG 9338 || ||| | || |||| || || || || || | || | || ||||| | | ||| Sbjct 633 ATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAACACCTGATAGG 574 Query 9339 GCTAGAGAAGCACACACGCAGATGAAAGCTGCAGCTATTCGTGGATCAAACAC---TCG- 9394 ||| | ||||| |||| ||||||||| |||||||| | || |||||| ||| Sbjct 573 GCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCTGCG------AAACACCAGTCGC 520 Query 9395 --GCTATTTGGTTTGGATGGAAATCTT-GGACCTGGTGAAGAGAATACAGAGAGGCATAC 9451 | |||||| |||| || | | || | | | | ||||| || || ||||| || || Sbjct 519 AAAATGTTTGGTATGGACGGCAGTGTTAGTAACAAG-GAAGAAAACACGGAGAGACACAC 461 Query 9452 TGTTGAAGATGTGAAGCGTGATATGCACTCTCTGCTTGGGATG 9494 || |||||||| || | || ||||||||||| || || ||| Sbjct 460 AGTGGAAGATGTCAATAGAGACATGCACTCTCTCCTGGGTATG 418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30953812798800