Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_009994.1 Length=9570 Score E Sequences producing significant alignments: (Bits) Value seq4616 223 2e-54 >seq4616 Length=1066 Score = 223 bits (246), Expect = 2e-54 Identities = 408/590 (69%), Gaps = 6/590 (1%) Strand=Plus/Minus Query 8772 GTCGTGAACTTACAACATCTTCTTGAATACACACC-CGACCAAGTAAGTTTATCAAACAC 8830 ||| | || ||| | ||||||||| | |||| || | || || | | || || ||||| Sbjct 1020 GTCCTTAATTTAAATCATCTTCTTCAGTACAATCCGCAACAAATTGACATT-TCTAACAC 962 Query 8831 AAGAGCTTTAAATTCGCAATTCGCATCATGGTACACGGGGGTGAAGAGTGACTATGACCT 8890 | || |||| ||||| | ||||| ||| |||| || ||| |||| ||| Sbjct 961 TCGTGCCACTCATTCACAATTTGAGAAGTGGTATGAGGGAGTGAGGAATGATTATGGCCT 902 Query 8891 CGATGATGCACAAATGGAGATTGTTTTGAATGGTTTAATGGTGTGGTGCATCGAGAATGG 8950 ||||| ||||| | | | | |||||||| ||||| ||||| ||||||||||| Sbjct 901 TAATGATAATGAAATGCAAGTGATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGG 842 Query 8951 AACCTCGCCAAATTTAAATGGAATGTGGGTCATGATGGATGGTGATGAACAGGTTGAATA 9010 || || ||| | || ||| | ||||| ||||||||||| || || ||||| || Sbjct 841 TACATCTCCAGACATATCTGGTGTCTGGGTTATGATGGATGGGGAAACCCAAGTTGATTA 782 Query 9011 CCCAATCAAACCCTTGTTGGAGCACGCCAAACCAACATTCAGACAAATCATGGCACACTT 9070 |||||||| || ||| | ||||| || | || |||| || ||||| ||||| ||||| Sbjct 781 TCCAATCAAGCCTTTGATTGAGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTT 722 Query 9071 TAGCAACTTGGCTGAAGCATATATAGAGAAGCGTAATGC-AGAGAAACCATATATGCCAA 9129 ||| ||| ||| |||||||| || | |||| | ||||| | || | || ||||| Sbjct 721 TAGTAACGCGGCAGAAGCATACATTGCGAAGAGAAATGCTACTGAGA-GGTACATGCCGC 663 Query 9130 GGTATGGTTTACAGCGCAATTTGACTGACATGACACTGGCACGTTATGCTTTTGATTTCT 9189 ||||||| | || | |||||||||||||| | || || | || ||||| || |||| Sbjct 662 GGTATGGAATCAAGAGAAATTTGACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCT 603 Query 9190 ACGAAATTAATTCGAGGACGCCAGTCAGAGCAAGGGAAGCACACATCCAAATGAAAGCAG 9249 | || | ||||||| || || | || || | ||||| ||||| || ||||| || | Sbjct 602 ATGAGGTGAATTCGAAAACACCTGATAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTG 543 Query 9250 CAGCAGTTGC-TAATTCGAAGAACAATTTATTTGGGTTGGATGGGAATGTCAGCACGAAG 9308 |||| | ||| || | | ||| | ||||| |||| || | ||| || | ||| Sbjct 542 CAGC-GCTGCGAAACACCAGTCGCAAAATGTTTGGTATGGACGGCAGTGTTAGTAACAAG 484 Query 9309 GAGGAAAACACAGAGCGGCACACTGCAACAGATGTTAATCGTAACATGCA 9358 || |||||||| ||| | ||||| | |||||| ||| | ||||||| Sbjct 483 GAAGAAAACACGGAGAGACACACAGTGGAAGATGTCAATAGAGACATGCA 434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30502702968864