Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_009995.1 Length=9730 Score E Sequences producing significant alignments: (Bits) Value seq4616 334 5e-88 seq4566 86.0 4e-13 >seq4616 Length=1066 Score = 334 bits (370), Expect = 5e-88 Identities = 471/660 (71%), Gaps = 20/660 (3%) Strand=Plus/Minus Query 8878 TTTAATGATAAGATGATCTTGCCTAGAGTCAGAGGTAAAATTGCATTAAATCTCGAGCAT 8937 |||| |||||||||| | | || ||| | | || || | || | ||| | | ||| Sbjct 1062 TTTACTGATAAGATGGTTCTACCGAGAATTAAGGGGAAGACTGTCCTTAATTTAAATCAT 1003 Query 8938 CTGTTGCAGTACAATCCTAATCAAATTGACCTGTCCAACACCAGGGCAACTCAGAATCAG 8997 || | ||||||||||| | ||||||||| | || ||||| | || ||||| || Sbjct 1002 CTTCTTCAGTACAATCCGCAACAAATTGACATTTCTAACACTCGTGCCACTCATTCACAA 943 Query 8998 TTTGATAGGTGGTACGATGGAGTCAAGAATGACTATGGTCTTGATGATGAAGAAATGGCT 9057 ||||| | |||||| || ||||| | |||||| ||||| ||| ||||| | |||||| Sbjct 942 TTTGAGAAGTGGTATGAGGGAGTGAGGAATGATTATGGCCTTAATGATAATGAAATGCAA 883 Query 9058 ATAGTGCTCAATGGTTTCATGGTGTGGTGCATTGAAAATGGCACATCTCCGAATGTTAAT 9117 | |||| |||||||| ||||| ||||| || || ||||| |||||||| | | | Sbjct 882 GTGATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCT 823 Query 9118 GGCGTGTGGACCATGATGGACAATGGGGAG---CAAGTGGAGTACTTACTGAAGCCAATG 9174 || || ||| |||||||| |||||| ||||| || || | | ||||| || Sbjct 822 GGTGTCTGGGTTATGATGGA---TGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTG 766 Query 9175 ATAGAACATGCATCTCCGACTCTGCGACAGATTATGGCTCATTATAGCAATGCAGCAGAG 9234 || || ||||| ||||| | | | || ||||||||||| | ||| || || ||||| Sbjct 765 ATTGAGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAA 706 Query 9235 GCGTACATTGCTAAGAGAAATGCAACGGAGCGTTACATGCCTCGATATGGACAAAAACGA 9294 || |||||||| ||||||||||| || ||| | |||||||| || |||||| || || Sbjct 705 GCATACATTGCGAAGAGAAATGCTACTGAGAGGTACATGCCGCGGTATGGAATCAAGAGA 646 Query 9295 AACCTCAGGGACATCAGTTTAGCCAGGTATGCTTTCGATTTCTATGAGATGACTTCCAAG 9354 || | | ||||| || | || || || |||||||| ||||||||| ||| ||| || Sbjct 645 AATTTGACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAA 586 Query 9355 ACTCCTGAGAGAGCGCGAGAAGCACACATGCAGATGAAGGCAGCAGCAATTAGGGGTGCG 9414 || ||||| || || || ||||| ||||||||||||||||| ||||| | |||| Sbjct 585 ACACCTGATAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGC-------GCTGCG 533 Query 9415 AA----CACTCG---ATTGTTTGGTATTGATGGAAATGTTGGTGGGGGAGAAGAGAACAC 9467 || || ||| | |||||||||| || || | |||| || ||||| ||||| Sbjct 532 AAACACCAGTCGCAAAATGTTTGGTATGGACGGCAGTGTTAGTAACAAGGAAGAAAACAC 473 Query 9468 GGAGAGACACACTGTTGATGATGTTGAGCGCGATATGCATAGCCTCCTGGGCATGCGTAA 9527 |||||||||||| || || ||||| | | || ||||| |||||||| ||||| || Sbjct 472 GGAGAGACACACAGTGGAAGATGTCAATAGAGACATGCACTCTCTCCTGGGTATGCGCAA 413 >seq4566 Length=1050 Score = 86.0 bits (94), Expect = 4e-13 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 8821 GATAAAGACGTTGATGTTGGAACAACAGGGACTTTCAGGGTTCCAAAGGTCAAAACTTTT 8880 |||| ||| || ||||||| || | || ||||||| ||||| | | ||| | ||| Sbjct 847 GATAGAGATGTCAATGTTGGGACCAGTGGAACTTTCACTGTTCCGAGAATTAAATCATTT 906 Query 8881 AATGATAAGATGATCTTGCCTAGAGTCAGAGGTAAAATTGCATTAAATCTCGAGCATCTG 8940 | |||||||||| | | || ||| | | || || | || | ||| | | ||||| Sbjct 907 ACTGATAAGATGGTTCTACCGAGAATTAAGGGGAAGACTGTCCTTAATTTAAATCATCTT 966 Query 8941 TTGCAGTACAATCCTAATCAAATTGACCTGTCCAACACCAGGGCAACTCAGAATCAGTTT 9000 | ||||||||||| | ||||||||| | || ||||| | || ||||| || ||| Sbjct 967 CTTCAGTACAATCCGCAACAAATTGACATTTCTAACACTCGTGCCACTCATTCACAATTT 1026 Query 9001 GATAGGTGGTACGATGGAGT 9020 || | |||||| || ||||| Sbjct 1027 GAGAAGTGGTATGAGGGAGT 1046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 31014600648224