Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_010735.1 Length=9742 Score E Sequences producing significant alignments: (Bits) Value seq4616 172 3e-39 >seq4616 Length=1066 Score = 172 bits (190), Expect = 3e-39 Identities = 341/501 (68%), Gaps = 8/501 (2%) Strand=Plus/Minus Query 8826 AAAGGGAAAAGTGTTTTGAATCTCGATCAACTTCTCGACTACAAGCCAAGCCAGATCGAT 8885 || ||||| | ||| | ||| | |||| ||||| | ||||| || || || || Sbjct 1032 AAGGGGAAGACTGTCCTTAATTTAAATCATCTTCTTCAGTACAATCCGCAACAAATTGAC 973 Query 8886 ATCTCAAACACAAGGGCAACGCAGGATCAATTTGACAAATGGTATCAGGCTGTTAGCACA 8945 || || ||||| | || || || |||||||| || |||||| ||| || || | Sbjct 972 ATTTCTAACACTCGTGCCACTCATTCACAATTTGAGAAGTGGTATGAGGGAGTGAGGAAT 913 Query 8946 GCATATGATGTAGGCGAAAAAGATATGCCAACAATAATGAACGGTTTGATGGTGTGGTGT 9005 | |||| | || || || |||| | || | || ||||||||||| |||||| Sbjct 912 GATTATGGCCTTAATGATAATGAAATGCAAGTGATGCTAAATGGTTTGATGGTTTGGTGT 853 Query 9006 ATCGAAAATGGAACATCTCCAAACATCAATGGTGTTTGGACAATGATGGATGGGGATGAA 9065 ||||| ||||| ||||||||| |||| |||||| ||| |||||||||||||| Sbjct 852 ATCGAGAATGGTACATCTCCAGACATATCTGGTGTCTGGGTTATGATGGATGGGGAAACC 793 Query 9066 CAAGTTGAGTATCCGTTGAAGCCTGTCGTTGAAAACGCGAAACCGACGTTTAGGCAAATC 9125 |||||||| ||||| | |||||| | |||| | || | ||| | ||||||||||| Sbjct 792 CAAGTTGATTATCCAATCAAGCCTTTGATTGAGCATGCTACTCCGTCATTTAGGCAAATT 733 Query 9126 ATGGCGCATTTTTCGGATATTGCAGAAGCATATATAGAGATGCGCAACAAAACAGAACCA 9185 ||||| || ||| | ||||||||||| || | || | | || || || Sbjct 732 ATGGCTCACTTTAGTAACGCGGCAGAAGCATACATTGCGAAGAGAAATGCTACTGAGAGG 673 Query 9186 TACATGCCACGGTATGGGCTGGTGCGTAACCTACGGGATATGAGTTTGGCTCGTTACGCA 9245 |||||||| |||||||| | | | || | || || || | ||| | ||||| Sbjct 672 TACATGCCGCGGTATGGAATCAAGAGAAATTTGACTGACATTAGCCTCGCTAGATACGCT 613 Query 9246 TTCGATTTCTACGAGGTAACATCTCGTACATCCACC----CGCGCTCGTGAGGCACATAT 9301 ||||| ||||| ||||| | || ||| | | |||| | ||||| || || || || Sbjct 612 TTCGACTTCTATGAGGTGA-AT-TCGAAAA--CACCTGATAGGGCTCGCGAAGCTCACAT 557 Query 9302 TCAGATGAAGGCAGCAGCGCT 9322 ||||||||||| |||||||| Sbjct 556 GCAGATGAAGGCTGCAGCGCT 536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 31052992974176