Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_010736.1 Length=9842 Score E Sequences producing significant alignments: (Bits) Value seq4616 246 2e-61 >seq4616 Length=1066 Score = 246 bits (272), Expect = 2e-61 Identities = 424/612 (69%), Gaps = 8/612 (1%) Strand=Plus/Minus Query 8996 GATAGGATGATGTTGCCCAAAAGCAAGGGCAAGT-TGGCATTGAATTTGGAACATCTCCT 9054 |||| |||| | | || | || ||||| ||| || | || ||||| | ||||| || Sbjct 1056 GATAAGATGGTTCTACCGAGAATTAAGGGGAAGACTGTCCTT-AATTTAAATCATCTTCT 998 Query 9055 AGTGTATAACCCAACTCAAGTTCAATTGTCAAACACTCGATCAACACAACGTCAGTTCGA 9114 ||| || || ||| || | | || |||||||| | || || || || || Sbjct 997 TCAGTACAATCCGCAACAAATTGACATTTCTAACACTCGTGCCACTCATTCACAATTTGA 938 Query 9115 CAAATGGTATGAGGGAATTATGACTGAGTATGGGTTGAGCGACGGTGAAATGCCCATTCT 9174 || |||||||||||| | | || ||| ||||| | | || |||||||| | | Sbjct 937 GAAGTGGTATGAGGGAGTGAGGAATGATTATGGCCTTAATGATAATGAAATGCAAGTGAT 878 Query 9175 CCTTAACGGTCTTATGGTATGGTGCATTGAGAATGGCACTTCACCAAATGTTAATGGAGT 9234 || || ||| | ||||| ||||| || |||||||| || || ||| | | ||| || Sbjct 877 GCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCTGGTGT 818 Query 9235 TTGGGTTATGATGGACGGAGATGAACAGATTGAATATCCTATCAAGCCATTGTTGGATCA 9294 |||||||||||||| || || || |||| ||||| |||||||| ||| | || || Sbjct 817 CTGGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTGATTGAGCA 758 Query 9295 CGCCAGTCCAACATTTAGACAAATAATGGCACATTTCAGCAACGCGGCTGAGGCTTACAT 9354 || | ||| ||||||| ||||| ||||| || || || |||||||| || || ||||| Sbjct 757 TGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCATACAT 698 Query 9355 AGCTAAGAGAAATTCTATGGAGCGCTACATGCCACGTTATGGCTTGAAGCGCAATCTCAC 9414 || ||||||||| ||| ||| | |||||||| || ||||| | ||| | ||| | || Sbjct 697 TGCGAAGAGAAATGCTACTGAGAGGTACATGCCGCGGTATGGAATCAAGAGAAATTTGAC 638 Query 9415 AGATATTAGCTTGGCGAGGTATGCTTTCGATTTTTATGAAATTACTTCCAAAACGCCTGA 9474 || |||||| | || || || |||||||| || ||||| | | ||| ||||| ||||| Sbjct 637 TGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAACACCTGA 578 Query 9475 GAGAGCGAGAGAGGCTCATTTGCAAATGAAAGCAGCTGCTATTCGTGGTGGCAACAGGCG 9534 || || | || ||||| |||| ||||| || || || | | | || ||| || Sbjct 577 TAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCTGC---GAAACACCAGTCG 521 Query 9535 ---ATTATTCGGAATCGATGGCAACGTTGGTGGAGGGGACGAGAACACGGAGAGGCACAC 9591 | | || || || || |||| ||| || ||| || ||||||||||| ||||| Sbjct 520 CAAAATGTTTGGTATGGACGGCAGTGTTAGTAACAAGGAAGAAAACACGGAGAGACACAC 461 Query 9592 TGTTGATGATGT 9603 || || ||||| Sbjct 460 AGTGGAAGATGT 449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 31372929023776