Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_010954.1 Length=9656 Score E Sequences producing significant alignments: (Bits) Value seq4616 134 8e-28 >seq4616 Length=1066 Score = 134 bits (148), Expect = 8e-28 Identities = 322/474 (68%), Gaps = 21/474 (4%) Strand=Plus/Minus Query 8933 GTGATG---AATGGTTTTATGGTGTGGTGTATCGATAACGGAACTTCGCCTGACATGAAT 8989 |||||| |||||||| ||||| ||||||||||| || || || || || ||||| | Sbjct 882 GTGATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCT 823 Query 8990 GGAGTCTGGGTGATGATGGATGGTGATGAACAGGTTGAGTACCCACTCAAACCAATGGTC 9049 || |||||||| ||||||||||| || || ||||| || ||| |||| || || | Sbjct 822 GGTGTCTGGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTGATT 763 Query 9050 GTAAATGCCAAGCCAACTCTTCGCCAAATAATGCACCATTTTTCAGATGCGGCTGAAGCG 9109 | |||| | || | || | ||||| ||| || ||| | ||||| ||||| Sbjct 762 GAGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCA 703 Query 9110 TACATAGAAATGAGAAATTCGGAAGGACTGTATATGCCTAGGTACGGTCTCTTGAGGAAT 9169 ||||| | | ||||||| | | ||| ||||| |||| || || ||| ||| Sbjct 702 TACATTGCGAAGAGAAATGCTACTGAGAGGTACATGCCGCGGTATGGAATCAAGAGAAAT 643 Query 9170 TTGAGGGATAAAAGTCTGGCACGCTATGCATTTGATTTCTACGAAGTCAATTCTAAAACG 9229 |||| || | || || || | || || || || ||||| || || ||||| ||||| Sbjct 642 TTGACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAACA 583 Query 9230 TCAGACCGAGCTCGAGAAGCGGTAGCA--CAGATGAAGGCCGCAGCCCTCGTGAACGTCA 9287 | || | ||||| ||||| | || ||||||||||| ||||| || | ||| || Sbjct 582 CCTGATAGGGCTCGCGAAGC--TCACATGCAGATGAAGGCTGCAGCGCT-GCGAA--ACA 528 Query 9288 ACAAT---AAGTTGTTTGGACTTGATGGGAACGTT-TCAACAACCAGCGAAAATACTGAG 9343 || | || ||||||| | || || | ||| ||||| | ||||| || ||| Sbjct 527 CCAGTCGCAAAATGTTTGGTATGGACGGCAGTGTTAGTAACAAGGA-AGAAAACACGGAG 469 Query 9344 AGGCACAC--TGCAAGGGATGTAAATCAGA-ATATGCATTCCCTTCTTGGGATG 9394 || ||||| || || ||||| ||| ||| | ||||| || || || || ||| Sbjct 468 AGACACACAGTGGAA--GATGTCAAT-AGAGACATGCACTCTCTCCTGGGTATG 418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30777847971520