Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_011541.1 Length=9650 Score E Sequences producing significant alignments: (Bits) Value seq4616 163 2e-36 >seq4616 Length=1066 Score = 163 bits (180), Expect = 2e-36 Identities = 374/554 (68%), Gaps = 18/554 (3%) Strand=Plus/Minus Query 8868 TTGATCTCTCGAACACTAGAGCCACACAAAATCAGTTTGCTTCATGGTATGAAGGAGTAA 8927 |||| | || |||||| | ||||| || || |||| |||||||| ||||| | Sbjct 977 TTGACATTTCTAACACTCGTGCCACTCATTCACAATTTGAGAAGTGGTATGAGGGAGTGA 918 Query 8928 --AATCAGAATACGATGTGGATGATGATAAGATGGCTATAATTTTAAATGGATTCATGGT 8985 ||| || || | | ||||| || | ||| | || ||||||| || ||||| Sbjct 917 GGAAT--GATTATGGCCTTAATGATAATGAAATGCAAGTGATGCTAAATGGTTTGATGGT 860 Query 8986 GTGGTGCATTGAGAATGGAACTTCACCGAATATAAACGGAGTGTGGGTGATGATGGATGG 9045 ||||| || |||||||| || || || | ||| || || ||||| ||||||||||| Sbjct 859 TTGGTGTATCGAGAATGGTACATCTCCAGACATATCTGGTGTCTGGGTTATGATGGATGG 800 Query 9046 AGAAGAACAAGTTGAATTTCCACTTAAACCCATCATTGATCACGCCAAACCTACACTCAG 9105 ||| |||||||| | |||| | || || | ||||| || || | || || | || Sbjct 799 GGAAACCCAAGTTGATTATCCAATCAAGCCTTTGATTGAGCATGCTACTCCGTCATTTAG 740 Query 9106 GCAGATAATGGCCCATTTCAGTAACGTTGCTGAAGCGTATATTGAAAGAAGGAA--CTA- 9162 ||| || ||||| || || ||||||| || ||||| || |||| | || || ||| Sbjct 739 GCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCATACATTGCGAAGAGAAATGCTAC 680 Query 9163 TGACAGACCATACATGCCACGTTATGGTCTTCAGCGTAATTTAACCGACATGAGCTTGGC 9222 ||| || |||||||| || ||||| | || | ||||| || ||||| ||| | || Sbjct 679 TGAGAG---GTACATGCCGCGGTATGGAATCAAGAGAAATTTGACTGACATTAGCCTCGC 623 Query 9223 ACGCTTTGCCTTTGACTTCTATGAAATGACGTCAAAGACGCCAGTCCGAGCGCGAGAAGC 9282 | | || || ||||||||||| ||| || || || || | | || || ||||| Sbjct 622 TAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAACACCTGATAGGGCTCGCGAAGC 563 Query 9283 GCACATCCAAATGAAAGCGGCTGCACTACGTGGAGCCAAGAATC---ACTTATTTGGGCT 9339 ||||| || ||||| || || || || | || || | || | | ||||| | Sbjct 562 TCACATGCAGATGAAGGCTGCAGCGCTGC---GAAACACCAGTCGCAAAATGTTTGGTAT 506 Query 9340 GGATGGAAATG-TCGGATCAGCAGACGAGAACACGGAAAGACACACCACCGACGATGTAA 9398 ||| || | || | | | || || || |||||||| |||||||| || ||||| | Sbjct 505 GGACGGCAGTGTTAGTAACA-AGGAAGAAAACACGGAGAGACACACAGTGGAAGATGTCA 447 Query 9399 ATAGGAACATGCAC 9412 |||| |||||||| Sbjct 446 ATAGAGACATGCAC 433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30758651808544