Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_011560.1 Length=9973 Score E Sequences producing significant alignments: (Bits) Value seq4616 178 8e-41 >seq4616 Length=1066 Score = 178 bits (196), Expect = 8e-41 Identities = 322/471 (68%), Gaps = 0/471 (0%) Strand=Plus/Minus Query 9130 TCATCTCATTGAGTACCAACCCCAACAGTCCGATCTGTTTAATACTCGCGCGTCACAAAC 9189 |||||| || ||||| | || ||||| || | | ||| ||||| || | || | Sbjct 1006 TCATCTTCTTCAGTACAATCCGCAACAAATTGACATTTCTAACACTCGTGCCACTCATTC 947 Query 9190 CCAATTCAATAATTGGTATGATGCGATCAAAAATGAGTATGGGGTTGATGATAGCCAGAT 9249 ||||| | || |||||||| | | | ||||| ||||| || |||||| | || Sbjct 946 ACAATTTGAGAAGTGGTATGAGGGAGTGAGGAATGATTATGGCCTTAATGATAATGAAAT 887 Query 9250 GCAGAGAATCATGAATGGCTTCATGGTGTGGTGTCTCGAGAATGGTACATCACCAAACAT 9309 ||| || | ||||| || ||||| |||||| |||||||||||||||| ||| |||| Sbjct 886 GCAAGTGATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACAT 827 Query 9310 AAATGGCGTGTGGGTTATGATGGATGGGGATGAACAAGTAGAATTTCCACTAAAACCAAT 9369 | ||| || |||||||||||||||||||| ||||| || | |||| | || || | Sbjct 826 ATCTGGTGTCTGGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTT 767 Query 9370 GGTGGAGAATGCCAAGCCTACGCTGCGTCAAATAATGCACCACTTTTCAGACGCAGCCGA 9429 | | ||| |||| | || | | | ||||| ||| |||||| |||| || || Sbjct 766 GATTGAGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGA 707 Query 9430 GGCTTACATTGATCTTAGGAATGCCGCTGCCCCATATATGCCTAGATATGGGTTGCTGCG 9489 || ||||||| || ||||| ||| || ||||| | ||||| | | | Sbjct 706 AGCATACATTGCGAAGAGAAATGCTACTGAGAGGTACATGCCGCGGTATGGAATCAAGAG 647 Query 9490 GAACTTAAGAGACAGAGGTCTAGCACGCTTCGCATTCGACTTCTATGAAGTCACTTCAAA 9549 || || | |||| | || || | | ||| |||||||||||||| || | ||| || Sbjct 646 AAATTTGACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAA 587 Query 9550 GACACCCGATCGTGCTAGAGAAGCTGTAGCGCAGATGAAGGCAGCAGCGCT 9600 ||||| ||| | ||| | |||||| |||||||||||| |||||||| Sbjct 586 AACACCTGATAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCT 536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 31792045248752