Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_011918.1 Length=9792 Score E Sequences producing significant alignments: (Bits) Value seq4616 248 5e-62 >seq4616 Length=1066 Score = 248 bits (274), Expect = 5e-62 Identities = 381/538 (71%), Gaps = 14/538 (3%) Strand=Plus/Minus Query 8871 CAGTCACAATTTGCTTCCTGGTATAATGGGGTAAAGAATGACTATGATGTTGATGATGAA 8930 || |||||||||| |||||| | || || | |||||| |||| || ||||| | Sbjct 951 CATTCACAATTTGAGAAGTGGTATGAGGGAGTGAGGAATGATTATGGCCTTAATGATAAT 892 Query 8931 CAGATGAAAATTATCTTGAATGGCTTAATGGTTTGGTGTATAGAAAATGGGACATCGCCT 8990 | ||| || | || | ||||| || |||||||||||||| || ||||| ||||| || Sbjct 891 GAAATGCAAGTGATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCA 832 Query 8991 AACATCAACGGGATGTGGGTGATGGTTGATGGTGAAGAGCAGATTGAATATCCAATTAAG 9050 |||| || | ||||| ||| | ||||| ||| || |||| |||||||| ||| Sbjct 831 GACATATCTGGTGTCTGGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAG 772 Query 9051 CCATTGATTGACCATGCCAAACCTTCATTTAGACAAATCATGGCGCATTTCAGTAACCTG 9110 || |||||||| ||||| | || |||||||| ||||| ||||| || || |||||| | Sbjct 771 CCTTTGATTGAGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCG 712 Query 9111 GCTGAAGCGTACATTGAGAAGCGCAATTCG---GAGAAGTCTTATATGCCAAGATATGGA 9167 || ||||| ||||||| |||| | ||| | |||| || | ||||| | |||||| Sbjct 711 GCAGAAGCATACATTGCGAAGAGAAATGCTACTGAGAGGT---ACATGCCGCGGTATGGA 655 Query 9168 CTTCAAAGAAATCTTACCGATATGTCATTAGCGCGATATGCTTTTGATTTCTATGAAATG 9227 | | |||||| | || || || | || |||| ||||| || |||||||| || Sbjct 654 ATCAAGAGAAATTTGACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTG 595 Query 9228 ACATCAAAAACTCCCGTTCGAGCACGTGAAGCTCATATTCAAATGAAGGCTGCAGCTTTG 9287 | || ||||| || | | | || || |||||||| || || |||||||||||||| || Sbjct 594 AATTCGAAAACACCTGATAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCTG 535 Query 9288 CGCAATGCCAACAATCG---AATGTTCGGACTGGACGGTA-AGGTAGGCACACAGGAGGA 9343 || || || || ||| |||||| || ||||||| | | ||| ||| |||| || Sbjct 534 CGAAA---CACCAGTCGCAAAATGTTTGGTATGGACGGCAGTGTTAGTAACA-AGGAAGA 479 Query 9344 GGATACCGAAAGGCACACTGCTGAAGATGTGAACAGGAATATGCACAATCTTCTTGGT 9401 | || || || ||||| | |||||||| || || | |||||| ||| || ||| Sbjct 478 AAACACGGAGAGACACACAGTGGAAGATGTCAATAGAGACATGCACTCTCTCCTGGGT 421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 31212960998976