Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_013261.1 Length=9502 Score E Sequences producing significant alignments: (Bits) Value seq4616 170 1e-38 >seq4616 Length=1066 Score = 170 bits (188), Expect = 1e-38 Identities = 301/436 (69%), Gaps = 2/436 (0%) Strand=Plus/Minus Query 8710 GACATTTCAAACACAAGAGCAACACATTCACAGTTCAAGCAGTGGTACGAGCAAGTCAAG 8769 |||||||| ||||| | || || |||||||| || || ||||||| ||| ||| | | Sbjct 975 GACATTTCTAACACTCGTGCCACTCATTCACAATTTGAGAAGTGGTATGAGGGAGTGAGG 916 Query 8770 AAAGAATATGATGTTAGCGACGATCAAATGCAAATTATTCTCAATGGTTTTATGGTTTGG 8829 || || |||| ||| || || |||||||| | || || |||||||| ||||||||| Sbjct 915 AATGATTATGGCCTTAATGATAATGAAATGCAAGTGATGCTAAATGGTTTGATGGTTTGG 856 Query 8830 GCTATTGAGAATGGAACATCACCAAACATCAACGGGTAT-TGGGTAATGATGGATGATCA 8888 ||| |||||||| ||||| ||| |||| | | ||| | ||||| |||||||||| | Sbjct 855 TGTATCGAGAATGGTACATCTCCAGACAT-ATCTGGTGTCTGGGTTATGATGGATGGGGA 797 Query 8889 AGAACAAGTAGAATACCCACTCAAACCAATTGTGGAGCACGCCAAACCCACATTGCGTCA 8948 | ||||| || || ||| |||| || | | ||||| || | || |||| | || Sbjct 796 AACCCAAGTTGATTATCCAATCAAGCCTTTGATTGAGCATGCTACTCCGTCATTTAGGCA 737 Query 8949 GTGCATGATGCATTTCAGTGATGCAGCAGAAGCATACATAGAAATGAGAAATCTTAAGCA 9008 ||| || || ||| | || |||||||||||||| | | ||||||| || | Sbjct 736 AATTATGGCTCACTTTAGTAACGCGGCAGAAGCATACATTGCGAAGAGAAATGCTACTGA 677 Query 9009 ACCGTACATGCCCAGATACGGTTTACTCAGAAACTTAAATGATAAAAGTCTCGCACGATT 9068 ||||||||| | || || | ||||| || | ||| | || ||||| ||| Sbjct 676 GAGGTACATGCCGCGGTATGGAATCAAGAGAAATTTGACTGACATTAGCCTCGCTAGATA 617 Query 9069 TGCATTTGATTTCTATGAAGTAACTTCACGAACACCAAATCGAGCACGAGAGGCTCATGC 9128 || || || |||||||| || | ||| |||||| || | || || || ||||| Sbjct 616 CGCTTTCGACTTCTATGAGGTGAATTCGAAAACACCTGATAGGGCTCGCGAAGCTCACAT 557 Query 9129 ACAAATGAAAGCAGCA 9144 || ||||| || ||| Sbjct 556 GCAGATGAAGGCTGCA 541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30285146455136