Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_014038.1 Length=9965 Score E Sequences producing significant alignments: (Bits) Value seq4616 134 9e-28 >seq4616 Length=1066 Score = 134 bits (148), Expect = 9e-28 Identities = 377/576 (65%), Gaps = 16/576 (3%) Strand=Plus/Minus Query 9103 AATCTAGATCATTTGCTCGAGTACACTCCACAACAGGTTGACATATCAAATACTCGCGCA 9162 ||| || ||||| | || |||||| ||| ||||| ||||||| || || ||||| || Sbjct 1014 AATTTAAATCATCTTCTTCAGTACAATCCGCAACAAATTGACATTTCTAACACTCGTGCC 955 Query 9163 ACCCAATCTCAATTTGATACTTGGTATGCAGCAGTTCAACAAGCATACGACATCAGTGAG 9222 || || || |||||||| | ||||||| | ||| | | || | | | | ||| Sbjct 954 ACTCATTCACAATTTGAGAAGTGGTATGAGGGAGTGAGGAATGATTATGGCCTTAATGAT 895 Query 9223 AGCGAGATGCCGACAGTGATG---AATGGACTTATGGTTTGGTGCATTGAAAATGGAACC 9279 | || |||| ||||||| ||||| | ||||||||||| || || ||||| || Sbjct 894 AATGAAATGCA---AGTGATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACA 838 Query 9280 TCGCCAAATATTAACGGCACTTGGGTGATGATGGAAGGAAGTGAGCAAGTCGAGTTCCCA 9339 || ||| | || || ||||| |||||||| || ||||| || | ||| Sbjct 837 TCTCCAGACATATCTGGTGTCTGGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCA 778 Query 9340 CTCAAACCCGTTATTGAAAATGCAAAACCGACGTTCAGACAAATCATGGCACACTTCTCT 9399 |||| || | ||||| |||| | ||| | || || ||||| ||||| ||||| | Sbjct 777 ATCAAGCCTTTGATTGAGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGT 718 Query 9400 GATGTCGCAGAGGCGTATATCGAAATGCGCAACAAAAAGGAACCGTATATGCCACGATAC 9459 | | ||||| || || || | | | | || | || ||| ||||| || || Sbjct 717 AACGCGGCAGAAGCATACATTGCGAAGAGAAATGCTACTGAGAGGTACATGCCGCGGTAT 658 Query 9460 GGTTTAGTTCGAAATTTGCGAGACATGAGTTTAGCTCGTTATGCGTTCGACTTTTATGAA 9519 || | |||||||| ||||| || | ||| | || || |||||||| ||||| Sbjct 657 GGAATCAAGAGAAATTTGACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAG 598 Query 9520 CTCACGTCTCAAACTTCAGTCCGAGCTAGAGAAGCGCACATACAAATGAAAGCAGCTGCT 9579 | | || |||| | | | ||| | ||||| ||||| || ||||| || || || Sbjct 597 GTGAATTCGAAAACACCTGATAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCG 538 Query 9580 TTG----AAATCAG-CGCAAACACGTATGTTTGGATTGGATGGTGGCATTGGTACAAAAG 9634 || | | ||| |||||| |||||||| |||| || | || ||| || | Sbjct 537 CTGCGAAACACCAGTCGCAAA-----ATGTTTGGTATGGACGGCAGTGTTAGTAACAAGG 483 Query 9635 AGGAAAACACAGAAAGACACACCACCGAGGATGTCA 9670 | |||||||| || |||||||| || ||||||| Sbjct 482 AAGAAAACACGGAGAGACACACAGTGGAAGATGTCA 447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 31766450364784