Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_014064.1 Length=9489 Score E Sequences producing significant alignments: (Bits) Value seq4616 168 4e-38 >seq4616 Length=1066 Score = 168 bits (186), Expect = 4e-38 Identities = 374/553 (68%), Gaps = 6/553 (1%) Strand=Plus/Minus Query 8713 ATCATCTTCTTGAGTACAAACCAGATCAAATTGATCTATCGAACGCACGGGCGACGAAGC 8772 ||||||||||| ||||||| || | |||||||| | || ||| | || || || | Sbjct 1007 ATCATCTTCTTCAGTACAATCCGCAACAAATTGACATTTCTAACACTCGTGCCACTCATT 948 Query 8773 AACAATTTGACGCCTGGTTCAATGGAGTGCAAAATGCATATGAGCTGGACGACATTCAGA 8832 ||||||||| |||| | |||||| |||| |||| || | || | | | | Sbjct 947 CACAATTTGAGAAGTGGTATGAGGGAGTGAGGAATGATTATGGCCTTAATGATAATGAAA 888 Query 8833 TGAAGATCTTGATGAACGGCTTAATGGTCTGGTGCATTGAGAATGGAACCTCACCAGATA 8892 || | | || | || || || ||||| ||||| || |||||||| || || ||||| | Sbjct 887 TGCAAGTGATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACA 828 Query 8893 TCACGGGTGTGTGGACGATGATGGACGGTGATGAACAAGTTGAGTACCCACTGCGACCCG 8952 | | ||||| ||| |||||||| || || |||||||| || ||| | || Sbjct 827 TATCTGGTGTCTGGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTT 768 Query 8953 TGATTGAAAATGCAAAGCCTACGCTGAGACAAGTCATGCGTCATTTCTCAGACATGGCCG 9012 ||||||| |||| | || | | || ||| | ||| ||| || || ||| | Sbjct 767 TGATTGAGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAG 708 Query 9013 AGGCCTATATAGAAATGAGGAATGC-AGAGAAACCCTACATGCCACGGTACGGTTTACAG 9071 | || || || | | ||| ||||| | || | |||||||| ||||| || | || Sbjct 707 AAGCATACATTGCGAAGAGAAATGCTACTGAGAGG-TACATGCCGCGGTATGGAATCAAG 649 Query 9072 AGAAATTTGAGAGATTATAGCCTAGCTCGGGTCGCATTCGATTTTTACGAGATTACATCT 9131 |||||||||| || |||||| ||| | ||| ||||| || || ||| | | || Sbjct 648 AGAAATTTGACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCG 589 Query 9132 AAAACCTCAGTTAGAGCTAGAGAAGCGCACATGCAGATGAAAGCTGCAGCCGTCGCAAAC 9191 ||||| | | ||| ||| | ||||| |||||||||||||| |||||||| | |||| Sbjct 588 AAAACACCTGATAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCTGCGAAAC 529 Query 9192 ACTACGGCG-AAGATGTTTGGTCTTGATGGTAATATCGGGACACAA-GAGGAAAATACTG 9249 || | | || || ||||||||| | || || | | | | | |||| || ||||| || | Sbjct 528 ACCA-GTCGCAAAATGTTTGGTATGGACGGCAGTGTTAGTA-ACAAGGAAGAAAACACGG 471 Query 9250 AACGACATACAGT 9262 | |||| ||||| Sbjct 470 AGAGACACACAGT 458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30243554768688