Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_014252.1 Length=9750 Score E Sequences producing significant alignments: (Bits) Value seq4616 208 5e-50 >seq4616 Length=1066 Score = 208 bits (230), Expect = 5e-50 Identities = 385/565 (68%), Gaps = 0/565 (0%) Strand=Plus/Minus Query 8814 CAGATTGACATAACCAACACCAGATCAACACAAGCACAATATCAAGCATGGTATGAAGGT 8873 || |||||||| | ||||| | | || || |||||| | | |||||||| || Sbjct 981 CAAATTGACATTTCTAACACTCGTGCCACTCATTCACAATTTGAGAAGTGGTATGAGGGA 922 Query 8874 GTTAAGAATGATTACGATGTGAGCGATCAGGACATGGAAGTTCTATTGAGTGGTTTAATG 8933 || | ||||||||| | | | ||| | || ||| |||| | | | |||||| ||| Sbjct 921 GTGAGGAATGATTATGGCCTTAATGATAATGAAATGCAAGTGATGCTAAATGGTTTGATG 862 Query 8934 GTTTGGTGTCTTGAAAACGGGACATCACCAAACCTAAATGGAATGTGGACGATGATGGAT 8993 ||||||||| | || || || ||||| ||| || || ||| | ||| ||||||||| Sbjct 861 GTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCTGGTGTCTGGGTTATGATGGAT 802 Query 8994 GGTGAGGAGCAACGGGAATACCCGATAAAACCATTAATTGATCACGCCAAACCTACATTC 9053 || || ||| || || || || || || || ||||| || || | || |||| Sbjct 801 GGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTGATTGAGCATGCTACTCCGTCATTT 742 Query 9054 AGGCAGATAATGCACCATTTCAGTGACGTAGCTGTCGCGTACATTGAAATGCGTAATACA 9113 ||||| || ||| || || ||| ||| || | || ||||||| | | | ||| | Sbjct 741 AGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCATACATTGCGAAGAGAAATGCT 682 Query 9114 AAGAAACCATATATGCCCGGATATGGTTTAAAACGTAACTTAAGAGATAGAAGCTTAGCT 9173 | | || ||||| | ||||| | || | || || | || | ||| | ||| Sbjct 681 ACTGAGAGGTACATGCCGCGGTATGGAATCAAGAGAAATTTGACTGACATTAGCCTCGCT 622 Query 9174 TGCTACGCTTTTGACTTCTACGAAATGACCTCAAGCTCACCTGAAAGGGCTAGAGAGGCA 9233 | |||||||| |||||||| || ||| || | ||||||| |||||| | || || Sbjct 621 AGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAACACCTGATAGGGCTCGCGAAGCT 562 Query 9234 CACCTGCAAATGAAAGCAGCGGCTCTTAAGAATTCAAGGACCAGGTTATTTGGCCTTGAT 9293 ||| |||| ||||| || || || || || | || || | ||||| | || Sbjct 561 CACATGCAGATGAAGGCTGCAGCGCTGCGAAACACCAGTCGCAAAATGTTTGGTATGGAC 502 Query 9294 GGCAGTGTTAGTAGCAAGGAAGAGGACACGGAGAGGCACACTGTTGAAGATGTTAATCGA 9353 ||||||||||||| ||||||||| |||||||||| ||||| || |||||||| ||| || Sbjct 501 GGCAGTGTTAGTAACAAGGAAGAAAACACGGAGAGACACACAGTGGAAGATGTCAATAGA 442 Query 9354 AACATGCACTCCCTGCTTGGCATGC 9378 |||||||||| || || || |||| Sbjct 441 GACATGCACTCTCTCCTGGGTATGC 417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 31078587858144