Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_014325.1 Length=9741 Score E Sequences producing significant alignments: (Bits) Value seq4616 127 1e-25 >seq4616 Length=1066 Score = 127 bits (140), Expect = 1e-25 Identities = 407/620 (66%), Gaps = 20/620 (3%) Strand=Plus/Minus Query 8734 TGTCCTTAACTTGGACCAGTTGCTGGAGTATCGACCTCAACAAGTAGATTTGTCAAACAC 8793 ||||||||| || | || | || |||| || |||||| | || | || ||||| Sbjct 1021 TGTCCTTAATTTAAATCATCTTCTTCAGTACAATCCGCAACAAATTGACATTTCTAACAC 962 Query 8794 TCGAGCAACGCAAGAACAATTCAGTCTGTGGTACGAGTATGTTAAGAACTCGTATGATGT 8853 ||| || || || |||||| |||||| ||| || | ||| |||| | Sbjct 961 TCGTGCCACTCATTCACAATTTGAGAAGTGGTATGAGGGAGTGAGGAATGATTATGGCCT 902 Query 8854 CTCCGATACTGAAATGGCAACACTCATG---AATGGACTAATGGTGTGGTGCATTGAAAA 8910 |||| ||||||| ||| | ||| ||||| | ||||| ||||| || || || Sbjct 901 TAATGATAATGAAATG-CAAG--TGATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAA 845 Query 8911 TGGAACATCACCTAACATTAATGGAGAATGGGTGATGATGGACGGAGAATCACAGGTCAC 8970 ||| ||||| || |||| ||| | ||||| |||||||| || ||| | || || Sbjct 844 TGGTACATCTCCAGACATATCTGGTGTCTGGGTTATGATGGATGGGGAAACCCAAGTTGA 785 Query 8971 ATACCCCTTAAAACCTGTGATAGAAGGAGCCAAACCAACCTTTCGACAAATTATGGCTCA 9030 || || | || ||| |||| || || | || | ||| | |||||||||||||| Sbjct 784 TTATCCAATCAAGCCTTTGATTGAGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCA 725 Query 9031 CTTCTCCGATGTAGCCGAAGCATACAT--CGAACTGCGTAACACAAAAGAGGCGTATATG 9088 ||| | | || ||||||||||| |||| | | || | | ||| ||| ||| Sbjct 724 CTTTAGTAACGCGGCAGAAGCATACATTGCGAA--GAGAAATGCTACTGAGAGGTACATG 667 Query 9089 CCACGATACGGCCTCATTCGAAATTTGCGAGATATGAGTTTAGCTCGTTACGCATTTGAC 9148 || || || || ||| |||||||| || || || | ||| | ||||| || ||| Sbjct 666 CCGCGGTATGGAATCAAGAGAAATTTGACTGACATTAGCCTCGCTAGATACGCTTTCGAC 607 Query 9149 TTCTATGAGATAACTTCTCGCACACCCAACCGAGCACGTGAAGCACATATACAAATGAAA 9208 ||||||||| | | ||| ||||| | | || || ||||| || || || ||||| Sbjct 606 TTCTATGAGGTGAATTCGAAAACACCTGATAGGGCTCGCGAAGCTCACATGCAGATGAAG 547 Query 9209 GCAGCAGCACT--TAAATCTGCA-CAATCAC-GTTTGTTTGGCTTGGATGGTGGCATCAG 9264 || ||||| || ||| || || || | ||||||| |||| || | | || Sbjct 546 GCTGCAGCGCTGCGAAA----CACCAGTCGCAAAATGTTTGGTATGGACGGCAGTGTTAG 491 Query 9265 TACACAA-CAAGAGAACACAGAGAGGCATACTACAGAAGATGTAAACTCTGATATGCACA 9323 || |||| |||| ||||| ||||| || || |||||||| || || |||||| Sbjct 490 TA-ACAAGGAAGAAAACACGGAGAGACACACAGTGGAAGATGTCAATAGAGACATGCACT 432 Query 9324 CACTACTTGGAGTGCGCAAC 9343 | || || || |||||||| Sbjct 431 CTCTCCTGGGTATGCGCAAC 412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 31049793613680