Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_014327.1 Length=9745 Score E Sequences producing significant alignments: (Bits) Value seq4616 206 2e-49 >seq4616 Length=1066 Score = 206 bits (228), Expect = 2e-49 Identities = 374/543 (69%), Gaps = 8/543 (1%) Strand=Plus/Minus Query 8889 CCTCAACAGATAGACATTTCAAACACAAGATCTACGCACAGCCAATTCGATAATTGGTAT 8948 || ||||| || |||||||| ||||| | | || || ||||| || || |||||| Sbjct 987 CCGCAACAAATTGACATTTCTAACACTCGTGCCACTCATTCACAATTTGAGAAGTGGTAT 928 Query 8949 GCTGCAGTTAAAAATGTTTATGATGTTGGAGACGCTGAGATGCAAACCATTATGAATGGA 9008 | | ||| | |||| ||||| || || ||| |||||| || | ||||| Sbjct 927 GAGGGAGTGAGGAATGATTATGGCCTTAATGATAATGAAATGCAAGTGATGCTAAATGGT 868 Query 9009 TTAATGGTTTGGTGCATTGAAAATGGAACCTCACCAAACATAAATGGCGTCTGGACCATG 9068 || ||||||||||| || || ||||| || || ||| ||||| ||| |||||| ||| Sbjct 867 TTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCTGGTGTCTGGGTTATG 808 Query 9069 ATGGATGGAGAGGAGCAAGTTGAATATCCATTGAAGCCCGTGATCGAGAATTCGAAGCCT 9128 |||||||| || |||||||| |||||| | ||||| |||| ||| || | | || Sbjct 807 ATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTGATTGAGCATGCTACTCCG 748 Query 9129 ACTTTTCGTCAGATCATGGCTCATTTTTCTGATGTCGCTGAGGCATACATTGAGATGAGG 9188 | ||| | || || |||||||| ||| | | | || || |||||||||| || ||| Sbjct 747 TCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCATACATTGCGAAGAGA 688 Query 9189 AATAAGAAGGAACCATACATGCCACGCTATGGTCTAATCCGGAATTTGCGAGACTTGAGT 9248 ||| | || |||||||| || ||||| | | | |||||| ||| | || Sbjct 687 AATGCTACTGAGAGGTACATGCCGCGGTATGGAATCAAGAGAAATTTGACTGACATTAGC 628 Query 9249 CTTGCACGATACGCTTTTGACTTCTATGAAGTCACATCGCGCACCCCTACCAGGGCACGT 9308 || || |||||||||| ||||||||||| || | ||| || ||| ||||| || Sbjct 627 CTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAACACCTGATAGGGCTCGC 568 Query 9309 GAAGCCCACATACAGATGAAGGCAGCGGCTTT---AAAATCTGCTCAGACACGTATGTTT 9365 ||||| ||||| ||||||||||| || || | ||| | || | | |||||| Sbjct 567 GAAGCTCACATGCAGATGAAGGCTGCAGCGCTGCGAAACACCAGTCGCAAA---ATGTTT 511 Query 9366 GGACTTGACGGTGGCATCAGTACACAA-GAGGAGAACACTGAGAGGCACACCACAGAAGA 9424 || | ||||| | | |||| |||| || || ||||| ||||| ||||| ||||| Sbjct 510 GGTATGGACGGCAGTGTTAGTA-ACAAGGAAGAAAACACGGAGAGACACACAGTGGAAGA 452 Query 9425 TGT 9427 ||| Sbjct 451 TGT 449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 31062591055664