Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_014536.1 Length=9870 Score E Sequences producing significant alignments: (Bits) Value seq4616 179 2e-41 >seq4616 Length=1066 Score = 179 bits (198), Expect = 2e-41 Identities = 292/416 (70%), Gaps = 6/416 (1%) Strand=Plus/Minus Query 8993 AATGGATTGATGGTTTGGTGCATTGAGAATGGAACTTCACCAAATATAAGTGGAGTATGG 9052 ||||| |||||||||||||| || |||||||| || || ||| | ||| ||| || ||| Sbjct 873 AATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCTGGTGTCTGG 814 Query 9053 ACAATGATGGACAAAGACGAGCAGGTCGAATTTCCACTAAAGCCCGTCATTGAAAATGCT 9112 |||||||| || || || || | |||| | ||||| | ||||| ||||| Sbjct 813 GTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTGATTGAGCATGCT 754 Query 9113 AAGCCCACTTTTCGCCAAATCATGGCACATTTTTCTGATGTTGCAGAAGCATACATAGAG 9172 | || | ||| | ||||| ||||| || ||| | | | |||||||||||||| | | Sbjct 753 ACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCATACATTGCG 694 Query 9173 ATGCGAAACAAGAATGAACCATATATGCCACGATATGGTTTAGTTAGAAATTTAAGGGAT 9232 | | |||| | ||| || ||||| || ||||| | |||||||| | || Sbjct 693 AAGAGAAATGCTACTGAGAGGTACATGCCGCGGTATGGAATCAAGAGAAATTTGACTGAC 634 Query 9233 ATGAGCCTGGCTCGATATGCTTTTGACTTTTATGAGGTCACATCCCGAACATCCGTCCGA 9292 || ||||| ||| |||| ||||| ||||| |||||||| | || |||| | | | Sbjct 633 ATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAACACCTGATAGG 574 Query 9293 GCTCGCGAAGCCCACATTCAAATGAAGGCTGCAGCACTGAAATCTACACAATT--TAAAT 9350 ||||||||||| ||||| || |||||||||||||| ||| | |||| | | ||| Sbjct 573 GCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCTGCGA--AACACCAGTCGCAAAA 516 Query 9351 TGTTTGGATTGGATGGTGGCATT-GGAACACAAGAGGAAAACACAGAGCGGCACAC 9405 ||||||| |||| || | || | |||| | || |||||||| ||| | ||||| Sbjct 515 TGTTTGGTATGGACGGCAGTGTTAGTAACA-AGGAAGAAAACACGGAGAGACACAC 461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 31462511117664