Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_014742.1 Length=10820 Score E Sequences producing significant alignments: (Bits) Value seq4616 210 2e-50 >seq4616 Length=1066 Score = 210 bits (232), Expect = 2e-50 Identities = 300/420 (71%), Gaps = 2/420 (0%) Strand=Plus/Minus Query 10046 ACTCAGGAACAGTTTCGAGCA-TGGTATGAAGGTGTTAAGGGTGATTATGGCGTTGATGA 10104 ||||| ||| ||| ||| | |||||||| || || | | |||||||||| || |||| Sbjct 954 ACTCATTCACAATTT-GAGAAGTGGTATGAGGGAGTGAGGAATGATTATGGCCTTAATGA 896 Query 10105 CGCTGGGATGGCAATCTTGTTGAATGGATTGATGGTATGGTGTATAGAGAATGGAACATC 10164 || ||| | | || | ||||| |||||||| |||||||| |||||||| ||||| Sbjct 895 TAATGAAATGCAAGTGATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATC 836 Query 10165 TCCAAATATAAATGGCGTTTGGACGATGATGGATGGGGATGAACAAGTGACGTATCCCAT 10224 |||| | ||| ||| || ||| |||||||||||||| ||||| ||||| || Sbjct 835 TCCAGACATATCTGGTGTCTGGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCAAT 776 Query 10225 AAAGCCATTACTGGATCATGCAGTGCCTACTTTTAGGCAAATCATGACACACTTCAGTGA 10284 ||||| || | || ||||| || | ||||||||||| ||| | ||||| ||| | Sbjct 775 CAAGCCTTTGATTGAGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAA 716 Query 10285 CGTTGCTGAAGCGTATATAGAAATGAGAAATCGCACCAAGGCATACATGCCTAGGTATGG 10344 || || ||||| || || | | ||||||| || || |||||||| ||||||| Sbjct 715 CGCGGCAGAAGCATACATTGCGAAGAGAAATGCTACTGAGAGGTACATGCCGCGGTATGG 656 Query 10345 ATTACAACGTAACTTGACTGATATGAGTCTTGCGCGATATGCATTTGATTTCTATGAGCT 10404 | | | | || |||||||| || || || || |||| || || || ||||||||| | Sbjct 655 AATCAAGAGAAATTTGACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGT 596 Query 10405 GCAATCAACAACACCTGCACGTGCTAAAGAAGCACACATGCAGATGAAAGCAGCTGCACT 10464 | | || | |||||||| | ||| ||||| |||||||||||||| || || || || Sbjct 595 GAATTCGAAAACACCTGATAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCT 536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34501903588864