Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_014790.2 Length=9682 Score E Sequences producing significant alignments: (Bits) Value seq4616 147 1e-31 >seq4616 Length=1066 Score = 147 bits (162), Expect = 1e-31 Identities = 370/555 (67%), Gaps = 12/555 (2%) Strand=Plus/Minus Query 8868 AACACAAGAGCAACTGATGCTCAATTTGCGGCTTGGTATGAGGGAGTCAAAGCTGAGTAT 8927 ||||| | || ||| || | ||||||| | |||||||||||||| | ||| ||| Sbjct 966 AACACTCGTGCCACTCATTCACAATTTGAGAAGTGGTATGAGGGAGTGAGGAATGATTAT 907 Query 8928 GAACTGAGTGACGACCAGATG---GGGATTGTTATGAATGGCTTTATGGTTTGGTGCATA 8984 | || | ||| | | ||| | ||| | || ||||| || ||||||||||| || Sbjct 906 GGCCTTAATGATAATGAAATGCAAGTGAT-GCTA--AATGGTTTGATGGTTTGGTGTATC 850 Query 8985 GACAACGGAACTTCACCAGATATAAATGGGGTGTGGGTAATGATGGATGGCGATGAGCAG 9044 || || || || || ||||| ||| ||| || ||||| ||||||||||| || || Sbjct 849 GAGAATGGTACATCTCCAGACATATCTGGTGTCTGGGTTATGATGGATGGGGAAACCCAA 790 Query 9045 GTTGAATACCCTCTTAAGCCAATGGTTGAAAATGCAAAACCCACTCTCCGACAGATTATG 9104 ||||| || || | ||||| || |||| |||| | || | | | || |||||| Sbjct 789 GTTGATTATCCAATCAAGCCTTTGATTGAGCATGCTACTCCGTCATTTAGGCAAATTATG 730 Query 9105 CACCATTTCTCGGACGCAGCTGAAGCATATATCGAGATGAGATGTGCAAGTGGGCCATAC 9164 || || |||| || |||||||| || | || |||| ||| | || | ||| Sbjct 729 GCTCACTTTAGTAACGCGGCAGAAGCATACATTGCGAAGAGAAATGCTACTGAGAGGTAC 670 Query 9165 ATGCCTAGGTATGGACTCTTGCGCAATTTGAGAGACAAGAATTTGGCACGATATGCTTTT 9224 ||||| |||||||| || | | ||||||| |||| | | || |||| ||||| Sbjct 669 ATGCCGCGGTATGGAATCAAGAGAAATTTGACTGACATTAGCCTCGCTAGATACGCTTTC 610 Query 9225 GATTTTTATGAAGTCAATGCTAAGACTTCCGATCGTGCTAGGGAAGCAGTTGCGCAAATG 9284 || || ||||| || ||| | || || | ||| | ||| | ||||| ||| ||| Sbjct 609 GACTTCTATGAGGTGAATTCGAAAACACCTGATAGGGCTCGCGAAGCTCACATGCAGATG 550 Query 9285 AAAGCTGCAGCTCTCAGTAATGTTACTAACAAGTTGTTTGGACTTGATGGTAATGTT-GC 9343 || |||||||| || | || | | ||| ||||||| | || || | |||| | Sbjct 549 AAGGCTGCAGCGCTGCGAAACACCAGTCGCAAAATGTTTGGTATGGACGGCAGTGTTAGT 490 Query 9344 AACAACTAGCGAGGACACTGAAAGGCATAC--TGCAAGGGATGTGAACCGAAACATGCAC 9401 ||||| | || |||| || || || || || || ||||| || || |||||||| Sbjct 489 AACAAGGA-AGAAAACACGGAGAGACACACAGTGGAA--GATGTCAATAGAGACATGCAC 433 Query 9402 ACTTTGTTGGGCATG 9416 || | |||| ||| Sbjct 432 TCTCTCCTGGGTATG 418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30861031344416