Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_014898.1 Length=10113 Score E Sequences producing significant alignments: (Bits) Value seq4616 219 3e-53 >seq4616 Length=1066 Score = 219 bits (242), Expect = 3e-53 Identities = 386/561 (69%), Gaps = 6/561 (1%) Strand=Plus/Minus Query 9332 GACATTTCAAACACAAGGAGCACACAATCCCAATTCAATTCATGGTATGAAAATGTTAAA 9391 |||||||| ||||| | ||| || || ||||| | |||||||| || | Sbjct 975 GACATTTCTAACACTCGTGCCACTCATTCACAATTTGAGAAGTGGTATGAGGGAGTGAGG 916 Query 9392 CATGATTATGATGTGCAAGATGATGCCATGCAGATCATATTAAATGGATTTATGGTCTGG 9451 ||||||||| | | ||| ||| ||||| | || ||||||| || ||||| ||| Sbjct 915 AATGATTATGGCCTTAATGATAATGAAATGCAAGTGATGCTAAATGGTTTGATGGTTTGG 856 Query 9452 TGTATTGAGAATGGAACATCACCAAATATATCAGGTGTTTGGACAATGATGGATGGGGAA 9511 ||||| |||||||| ||||| ||| | ||||| ||||| ||| ||||||||||||||| Sbjct 855 TGTATCGAGAATGGTACATCTCCAGACATATCTGGTGTCTGGGTTATGATGGATGGGGAA 796 Query 9512 GAACAAGTTGAATACCCTCTGAAACCAATGGTTGAACATGCAAAACCAACATTGCGCCAG 9571 |||||||| || || | || || || |||| ||||| | || |||| | || Sbjct 795 ACCCAAGTTGATTATCCAATCAAGCCTTTGATTGAGCATGCTACTCCGTCATTTAGGCAA 736 Query 9572 ATAATGGCACACTTTAGTAATGCCGCAGAGCCATATATAGAAATGAGAAA---TACTGAA 9628 || ||||| ||||||||||| || ||||| |||| || | | |||||| |||||| Sbjct 735 ATTATGGCTCACTTTAGTAACGCGGCAGAAGCATACATTGCGAAGAGAAATGCTACTGAG 676 Query 9629 AGATCGTACATGCCCAGGTACGGTAGGCAGAGGAATCTCAATGATCGCAGTCTAGCACGA 9688 || ||||||||| |||| || | |||| ||| | | ||| || || || || Sbjct 675 AG---GTACATGCCGCGGTATGGAATCAAGAGAAATTTGACTGACATTAGCCTCGCTAGA 619 Query 9689 TTTGCATTTGACTTCTATGAAATTACCTCAAATACACCCGAGAAGGCACGGGAGGCACAT 9748 | || || ||||||||||| | | || || ||||| || | ||| || || || || Sbjct 618 TACGCTTTCGACTTCTATGAGGTGAATTCGAAAACACCTGATAGGGCTCGCGAAGCTCAC 559 Query 9749 TTTCAAATGAAGGCAGCAGCATTACGAGATGCAAGAAACAAAATGTTTGGGCTAGACGGC 9808 | || |||||||| ||||| | ||| | | || |||||||||||| | |||||| Sbjct 558 ATGCAGATGAAGGCTGCAGCGCTGCGAAACACCAGTCGCAAAATGTTTGGTATGGACGGC 499 Query 9809 AAAACTGGCATACAGGGCGAGGACACGGAAAGACATACCGCTGCGGATGTGAGTGCTGAT 9868 | | | | ||| || ||||||| ||||| || | | ||||| | | || Sbjct 498 AGTGTTAGTAACAAGGAAGAAAACACGGAGAGACACACAGTGGAAGATGTCAATAGAGAC 439 Query 9869 ATGCACTCACTCTTAGGCATG 9889 |||||||| ||| | || ||| Sbjct 438 ATGCACTCTCTCCTGGGTATG 418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 32239955718192