Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_014905.1 Length=9917 Score E Sequences producing significant alignments: (Bits) Value seq4616 206 2e-49 >seq4616 Length=1066 Score = 206 bits (228), Expect = 2e-49 Identities = 384/564 (68%), Gaps = 0/564 (0%) Strand=Plus/Minus Query 9099 CAGATAGATATTTCAAATAGAAGAGCAACACATAGTCAATATGATGCATGGTTTGAAGGT 9158 || || || ||||| || | | || || ||| |||| ||| |||| ||| || Sbjct 981 CAAATTGACATTTCTAACACTCGTGCCACTCATTCACAATTTGAGAAGTGGTATGAGGGA 922 Query 9159 GTGAAGAAGGACTACGACGTGAGTGACGCAGAGATGGAGATTTTACTCAGCGGATTGATG 9218 |||| ||| || || | | | | ||| || ||| | | | || | || |||||| Sbjct 921 GTGAGGAATGATTATGGCCTTAATGATAATGAAATGCAAGTGATGCTAAATGGTTTGATG 862 Query 9219 GTTTGGTGTCTTGAGAACGGAACATCACCAGATTTAAGTGGTACTTGGACAATGATGGAT 9278 ||||||||| | ||||| || ||||| ||||| || |||| ||| ||||||||| Sbjct 861 GTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCTGGTGTCTGGGTTATGATGGAT 802 Query 9279 GGAGAAGAGCAAAAAGAGTATCCGATTAAACCATTGATTGAGCATGCCAAACCAACATTT 9338 || ||| ||| || ||||| || || || |||||||||||||| | || ||||| Sbjct 801 GGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTGATTGAGCATGCTACTCCGTCATTT 742 Query 9339 CGCCAGATAATGCATCATTTCAGTGACGTTGCAGTTGCTTACATTGAAATGCGAAACACA 9398 | || || ||| ||| || ||| ||| |||| || ||||||| | | |||| | Sbjct 741 AGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCATACATTGCGAAGAGAAATGCT 682 Query 9399 AAAGGTCCATATATGCCAGGATATGGACTAAAACGAAATTTGAGGGATCGAAGTCTTGCA 9458 | | || ||||| | |||||| | || ||||||||| || || || || Sbjct 681 ACTGAGAGGTACATGCCGCGGTATGGAATCAAGAGAAATTTGACTGACATTAGCCTCGCT 622 Query 9459 TGCTACGCATTTGACTTTTACGAAATGACTTCGAAGTCCCCAGAAAGGGCTAAAGAAGCA 9518 | ||||| || ||||| || || ||| |||||| | || || |||||| ||||| Sbjct 621 AGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAACACCTGATAGGGCTCGCGAAGCT 562 Query 9519 CATTTGCAGATGAAAGCTGCATCTCTCAAGAACTCACGCACCAAGGTCTTTGGCCTTGAT 9578 || |||||||||| |||||| | || ||| | | ||| | ||||| | || Sbjct 561 CACATGCAGATGAAGGCTGCAGCGCTGCGAAACACCAGTCGCAAAATGTTTGGTATGGAC 502 Query 9579 GGCAGTGTCAGTAGCAAAGAGGAGAACACGGAGAGGCATACTGTCGAAGATGTTAACCGT 9638 |||||||| |||| ||| || || ||||||||||| || || || |||||||| || | Sbjct 501 GGCAGTGTTAGTAACAAGGAAGAAAACACGGAGAGACACACAGTGGAAGATGTCAATAGA 442 Query 9639 GACATGCATACCCTACTCGGTATG 9662 |||||||| | || || |||||| Sbjct 441 GACATGCACTCTCTCCTGGGTATG 418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 31612881060976