Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_015393.1 Length=9999 Score E Sequences producing significant alignments: (Bits) Value seq4616 221 8e-54 >seq4616 Length=1066 Score = 221 bits (244), Expect = 8e-54 Identities = 388/565 (69%), Gaps = 0/565 (0%) Strand=Plus/Minus Query 9156 CAAGTTGATATCTCGAATAGGAGGGCAACACATAGTCAATATGAAGCATGGTTTGAGGGC 9215 ||| |||| || || || | | || || ||| |||| ||| |||| |||||| Sbjct 981 CAAATTGACATTTCTAACACTCGTGCCACTCATTCACAATTTGAGAAGTGGTATGAGGGA 922 Query 9216 GTCAAGAAAGATTATGGAGTGTCTGATAGTGAAATGGAAGTTTTACTTAGTGGGCTAATG 9275 || | ||| |||||||| | ||||| ||||||| |||| | || | ||| | ||| Sbjct 921 GTGAGGAATGATTATGGCCTTAATGATAATGAAATGCAAGTGATGCTAAATGGTTTGATG 862 Query 9276 GTTTGGTGTCTGGAAAATGGTACTTCGCCAGACTTAAACGGCATGTGGACAATGATGGAT 9335 ||||||||| | || |||||||| || |||||| || || | ||| ||||||||| Sbjct 861 GTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCTGGTGTCTGGGTTATGATGGAT 802 Query 9336 GGAGACGAGCAGAGAGAATACCCAGTCAAGCCATTATTAGAGCACGCAAAACCCACATTT 9395 || || || || || ||| ||||||| || | ||||| || | || ||||| Sbjct 801 GGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTGATTGAGCATGCTACTCCGTCATTT 742 Query 9396 AGGCAAATAATGCACCATTTCAGTGATGTGGCTGTCGCATATATTGAAATGAGGAATACA 9455 |||||||| ||| || || ||| | | ||| | ||||| |||| | ||| ||| | Sbjct 741 AGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCATACATTGCGAAGAGAAATGCT 682 Query 9456 AAAGGTCCATACATGCCAGGCTATGGACTTAAAAGAAATCTGAGGGATCGAAGCTTGGCA 9515 | | |||||||| | |||||| | || |||||| ||| || ||| | || Sbjct 681 ACTGAGAGGTACATGCCGCGGTATGGAATCAAGAGAAATTTGACTGACATTAGCCTCGCT 622 Query 9516 TGTTATGCTTTCGATTTTTATGAAATGACTTCGAGGTCACCTGAAAGGGCCAGAGAAGCA 9575 | || |||||||| || ||||| ||| ||||| ||||||| ||||| | ||||| Sbjct 621 AGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAACACCTGATAGGGCTCGCGAAGCT 562 Query 9576 CATTTACAAATGAAAGCCGCAGCTCTCAGAAACACAAAGACTAGGCTACTTGGTCTTGAT 9635 || | || ||||| || ||||| || ||||||| | | | ||||| | || Sbjct 561 CACATGCAGATGAAGGCTGCAGCGCTGCGAAACACCAGTCGCAAAATGTTTGGTATGGAC 502 Query 9636 GGCAGCGTTAGTGGTAAGGAGGAGGACACGGAGAGACACACCGTTGATGATGTTAATCGC 9695 ||||| |||||| ||||| || |||||||||||||||| || || ||||| ||| | Sbjct 501 GGCAGTGTTAGTAACAAGGAAGAAAACACGGAGAGACACACAGTGGAAGATGTCAATAGA 442 Query 9696 AATATGCATTCCCTTCTCGGAATGC 9720 | ||||| || || || || |||| Sbjct 441 GACATGCACTCTCTCCTGGGTATGC 417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 31875228621648