Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06]
17,764 sequences; 369,781,828 total letters
Query= NC_015394.2
Length=9682
Score E
Sequences producing significant alignments: (Bits) Value
seq4616 149 4e-32
>seq4616
Length=1066
Score = 149 bits (164), Expect = 4e-32
Identities = 315/463 (68%), Gaps = 8/463 (2%)
Strand=Plus/Minus
Query 8954 AATGGCTTTATGGTGTGGTGTATTGACAATGGCACCTCACCTGATGTTAATGGAGTGTGG 9013
||||| || ||||| |||||||| || ||||| || || || || | ||| || |||
Sbjct 873 AATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCTGGTGTCTGG 814
Query 9014 GTTATGATGGATGGTGATGAACAAGTTGAATATCCATTGAAACCAATGGTGGAGAATGCA 9073
|||||||||||||| || |||||||| |||||| | || || || | ||| ||||
Sbjct 813 GTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTGATTGAGCATGCT 754
Query 9074 AAGCCCACACTAAGACAAATAATGCACCATTTCTCTGACGCAGCTGAAGCGTACATTGAG 9133
| || || | || ||||| ||| || || | |||| || ||||| ||||||| |
Sbjct 753 ACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCATACATTGCG 694
Query 9134 ATGAG--GTGCTCAACAGGACCATACATGCCTAGGTATGGCCTATTGCGCAATTTGAGAG 9191
| ||| |||| || | |||||||| ||||||| | | | ||||||| |
Sbjct 693 AAGAGAAATGCT--ACTGAGAGGTACATGCCGCGGTATGGAATCAAGAGAAATTTGACTG 636
Query 9192 ATAGGAGTCTGGCACGCTATGCTTTTGACTTTTATGAAGTTAATGCAAAGACAGCAGTGC 9251
| | || || || | || ||||| ||||| ||||| || ||| | || ||| | |
Sbjct 635 ACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAACACCTGATA 576
Query 9252 GTGCTAGGGAAGCAGTAGCGCAGATGAAAGCTGCAGCTCTCAGCAACGTCAACACTAAGT 9311
| ||| | ||||| ||||||||| |||||||| || | ||| || ||
Sbjct 575 GGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCTGCGAAACACCAGTCGCAAAA 516
Query 9312 TGTTTGGCTTGGACGGAAACGTT-GCAACAACCAGCGAGAACACTGAAAGGCACACTGCA 9370
||||||| ||||||| | ||| | ||||| | || ||||| || || ||||| |
Sbjct 515 TGTTTGGTATGGACGGCAGTGTTAGTAACAAGGA-AGAAAACACGGAGAGACACACAGTG 457
Query 9371 AAGGATGTAAAT-GAGAACATGCATTCCCTTTTAGGGATGGGC 9412
| ||||| ||| ||| ||||||| || || | || ||| ||
Sbjct 456 GAAGATGTCAATAGAG-ACATGCACTCTCTCCTGGGTATGCGC 415
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 30861031344416
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |