Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_016044.1 Length=9595 Score E Sequences producing significant alignments: (Bits) Value seq4616 293 1e-75 >seq4616 Length=1066 Score = 293 bits (324), Expect = 1e-75 Identities = 425/595 (71%), Gaps = 4/595 (1%) Strand=Plus/Minus Query 8770 AAGGCTGTAATAAATTTGGATCACCTCCTCAAGTACACACCGGATCAAGTA-ACACTTTC 8828 ||| |||| | ||||| |||| || || |||||| ||| | ||| | ||| |||| Sbjct 1026 AAGACTGTCCTTAATTTAAATCATCTTCTTCAGTACAATCCGCAACAAATTGACA-TTTC 968 Query 8829 AAACACAAGAGCGCTAAATTCACAATTTGCTTCGTGGTATGAGGGCGTTAAAACTGATTA 8888 ||||| | || |||||||||||| |||||||||||| || | | |||||| Sbjct 967 TAACACTCGTGCCACTCATTCACAATTTGAGAAGTGGTATGAGGGAGTGAGGAATGATTA 908 Query 8889 TGACCTAAATGACTCACAAATGGAAATAGTTCTAAATGGTTTGATGGTTTGGTGCATTGT 8948 || ||| ||||| ||||| || | | ||||||||||||||||||||||| || | Sbjct 907 TGGCCTTAATGATAATGAAATGCAAGTGATGCTAAATGGTTTGATGGTTTGGTGTATCGA 848 Query 8949 GTATGGAACATCACCAAATCTAAATGGAATGTGGGTCATGATGGATGGTGATGAACAAGT 9008 | |||| ||||| ||| | || ||| | ||||| ||||||||||| || ||||| Sbjct 847 GAATGGTACATCTCCAGACATATCTGGTGTCTGGGTTATGATGGATGGGGAAACCCAAGT 788 Query 9009 TGAGTACCCAATCAAACCCCTCTTGGATCATGCTAGACCAACTTTTAGACAAATCATGGC 9068 ||| || |||||||| || | | || ||||||| || | ||||| ||||| ||||| Sbjct 787 TGATTATCCAATCAAGCCTTTGATTGAGCATGCTACTCCGTCATTTAGGCAAATTATGGC 728 Query 9069 ACATTTCAGTAACTTGGCAGAAGCTTACATAGAGAAGCGTAATGC-AGAGAAACCATATA 9127 || || |||||| ||||||||| ||||| | |||| | ||||| | || | || | Sbjct 727 TCACTTTAGTAACGCGGCAGAAGCATACATTGCGAAGAGAAATGCTACTGAGA-GGTACA 669 Query 9128 TGCCAAGGTATGGTTTGCAGCGCAATTTGACTGACATGACTCTAGCTCGGTATGCATTCG 9187 |||| ||||||| | || | |||||||||||||| | || ||| | || || |||| Sbjct 668 TGCCGCGGTATGGAATCAAGAGAAATTTGACTGACATTAGCCTCGCTAGATACGCTTTCG 609 Query 9188 ATTTTTATGAGATTAACTCAAAAACACCAGCTAGAGCGAGAGAGGCTCACATCCAAATGA 9247 | || |||||| | || || |||||||| | ||| || | || |||||||| || |||| Sbjct 608 ACTTCTATGAGGTGAATTCGAAAACACCTGATAGGGCTCGCGAAGCTCACATGCAGATGA 549 Query 9248 GGGCCGCAGCTGTTATGCACGCAAAGAACAATATGTTTGGCCTGGATGGAAATGTCAGCA 9307 ||| ||||| | || | | ||| |||||||| |||| || | ||| || | Sbjct 548 AGGCTGCAGCGCTGCGAAACACCAGTCGCAAAATGTTTGGTATGGACGGCAGTGTTAGTA 489 Query 9308 CCAAAGAGGAGAACACAGAGCGACACACTGCCACGGATGTAAATCGAGACATGCA 9362 ||| || || ||||| ||| ||||||| | ||||| ||| |||||||||| Sbjct 488 ACAAGGAAGAAAACACGGAGAGACACACAGTGGAAGATGTCAATAGAGACATGCA 434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30582686981264