Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_016159.1 Length=9626 Score E Sequences producing significant alignments: (Bits) Value seq4616 114 8e-22 >seq4616 Length=1066 Score = 114 bits (126), Expect = 8e-22 Identities = 284/429 (66%), Gaps = 4/429 (1%) Strand=Plus/Minus Query 8879 AAATGAAAGTTGTCCTCAATGGATTTATGGTCTGGTGCATTGAAAATGGAACTTCACCAA 8938 ||||| |||| | || ||||| || ||||| ||||| || || ||||| || || ||| Sbjct 890 AAATGCAAGTGATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAG 831 Query 8939 ACATTAATGGGGTGTGGACAATGATGGAAGGTGAGGAGCAGGTGGAGTTTCCCTTGAAAC 8998 |||| ||| || ||| |||||||| || || || || || | ||| | || | Sbjct 830 ACATATCTGGTGTCTGGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGC 771 Query 8999 CGTTCGTTGAGAATGCTAAACCCACACTTCGGCAAATTATGCGCCATTTCTCTGATGCGG 9058 | || ||||| |||||| || || || ||||||||||| || || | | |||| Sbjct 770 CTTTGATTGAGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGG 711 Query 9059 CAGAGGCATATATTGAATTCCGCAATTCTGAAAAACCATACATACCACGTTTTG--CCCA 9116 |||| ||||| |||| | ||| || | ||||| || || | || || Sbjct 710 CAGAAGCATACATTGCGAAGAGAAATGCTACTGAGAGGTACATGCCGCGGTATGGAATCA 651 Query 9117 GGTTCGTAACTTGCGTGATGTGAGCTTGGCTAGGTATGCTTTTGATTTTTATGAAATGAA 9176 | | || ||| ||| | ||| | ||||| || ||||| || || ||||| |||| Sbjct 650 AG--AGAAATTTGACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAA 593 Query 9177 CTCACGCACACCAAACAGAGCCCGAGAGGCTCATTTGCAGATGAAGGCGGCTGCACTGGT 9236 || ||||| | || || || || ||||| ||||||||||||| || || ||| Sbjct 592 TTCGAAAACACCTGATAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCTGCG 533 Query 9237 TAACACCAATACACGTCTCTTTGGTCTAGATGGAAACGTCTCTACCATTGAAGAAAACAC 9296 ||||||| | | |||||| | || || | || || || ||||||||||| Sbjct 532 AAACACCAGTCGCAAAATGTTTGGTATGGACGGCAGTGTTAGTAACAAGGAAGAAAACAC 473 Query 9297 GGAAAGGCA 9305 ||| || || Sbjct 472 GGAGAGACA 464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30681867156640