Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_016441.1 Length=9649 Score E Sequences producing significant alignments: (Bits) Value seq4616 170 1e-38 >seq4616 Length=1066 Score = 170 bits (188), Expect = 1e-38 Identities = 285/406 (70%), Gaps = 16/406 (4%) Strand=Plus/Minus Query 8851 TGGTATAATGCAGTGAAACAGGAATATGAACTTGATGATGGGCAGATGGCAATCGTGATG 8910 |||||| | | ||||| | || |||| ||| ||||| | ||| ||| |||||| Sbjct 933 TGGTATGAGGGAGTGAGGAATGATTATGGCCTTAATGATAATGAAATG-CAA--GTGATG 877 Query 8911 ---AATGGTTTCATGGTTTGGTGCATTGACAATGGAACTTCTCCTGATATCAATGGAACA 8967 |||||||| ||||||||||| || || ||||| || ||||| || || ||| Sbjct 876 CTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCTGGTGTC 817 Query 8968 TGGATTATGATGGATGGGGATGAGCAAGTTGAATATCCACTGAAACCAATGGTAGAGAAT 9027 ||| |||||||||||||||| |||||||| |||||| | || || || | ||| || Sbjct 816 TGGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTGATTGAGCAT 757 Query 9028 GCTAAGCCAACTTTGAGACAAATCATGCATCATTTTTCAGAGGCAGCTGAAGCCTATATT 9087 |||| || | || || ||||| ||| ||| ||| | || || ||||| || ||| Sbjct 756 GCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCATACATT 697 Query 9088 GAAATGAGAAATGCT---GAGAAACCATACATGCCTAGGTATGGTCTTCTAAGAAATTTG 9144 | | |||||||||| |||| |||||||| ||||||| | ||||||||| Sbjct 696 GCGAAGAGAAATGCTACTGAGAGG---TACATGCCGCGGTATGGAATCAAGAGAAATTTG 640 Query 9145 AGAGATAAAAATCTAGCTCGCTATGCTTTCGACTTCTATGAAGTTACATCTAAGACAACA 9204 | || | | || ||| | || ||||||||||||||||| || | || || ||| | Sbjct 639 ACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAACACCT 580 Query 9205 GATCGGGCAAGGGAAGCAATAGCA--CAGATGAAGGCAGCAGCTCT 9248 ||| |||| | ||||| | || ||||||||||| ||||| || Sbjct 579 GATAGGGCTCGCGAAGC--TCACATGCAGATGAAGGCTGCAGCGCT 536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30755452448048