Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_017824.1 Length=10057 Score E Sequences producing significant alignments: (Bits) Value seq4616 226 2e-55 >seq4616 Length=1066 Score = 226 bits (250), Expect = 2e-55 Identities = 397/574 (69%), Gaps = 8/574 (1%) Strand=Plus/Minus Query 9035 CAAATTAACATTTCAAATACTCGAGCCACA-ATGCAACAGTTCAACAAGTGGTATGATGC 9093 |||||| ||||||| || ||||| ||||| || || || || | ||||||||||| | Sbjct 981 CAAATTGACATTTCTAACACTCGTGCCACTCATTCA-CAATTTGAGAAGTGGTATGAGGG 923 Query 9094 TGTCAAGACTGAGTATGGTGTAGAAGATGACGGAATGGGAATTCTACTCAATGGTCTGAT 9153 || | || ||| ||||| | | ||| | | |||| | | | || |||||| |||| Sbjct 922 AGTGAGGAATGATTATGGCCTTAATGATAATGAAATGCAAGTGATGCTAAATGGTTTGAT 863 Query 9154 GGTGTGGTGCATTGAGAATGGAACTTCACCTAATGTTAATGGAGTTTGGGTGATGATGGA 9213 ||| ||||| || |||||||| || || || | | ||| || ||||| |||||||| Sbjct 862 GGTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCTGGTGTCTGGGTTATGATGGA 803 Query 9214 TGGGGAGGAGCAAGTTGAATATTCTTTGAAACCCATCGTTGAGAATGCCAAGCCTACCCT 9273 |||||| |||||||| ||| | | || || | ||||| |||| | || | | Sbjct 802 TGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTGATTGAGCATGCTACTCCGTCATT 743 Query 9274 TCGGCAAATAATGGCACACTTTTCTAATGTAGCTGAGGCCTATATTGAAAAGAGAAATTT 9333 | ||||||| ||||| |||||| ||| | || || || || |||| ||||||||| Sbjct 742 TAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCATACATTGCGAAGAGAAATGC 683 Query 9334 GAAGGAACCATACATGCCACGGTATGGATTAGTGCGCAATTTGAGGGATCCGAGTCTAGC 9393 | || |||||||| ||||||||| | | | ||||||| || || || || Sbjct 682 TACTGAGAGGTACATGCCGCGGTATGGAATCAAGAGAAATTTGACTGACATTAGCCTCGC 623 Query 9394 TCGCTATGCTTTTGATTTTTATGAGGTTACCTCTAAAACTCCAAATAGAGTTAGAGAAGC 9453 | | || ||||| || || |||||||| | || ||||| || |||| | | | ||||| Sbjct 622 TAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAACACCTGATAGGGCTCGCGAAGC 563 Query 9454 CCATATGCAAATGAAAGCGGCGGCCCTTAAAAGCACCCAAACTCG---ACTTTTCGGTTT 9510 || ||||| ||||| || || || || || |||| | ||| | | || ||| | Sbjct 562 TCACATGCAGATGAAGGCTGCAGCGCTGCGAAACACC---AGTCGCAAAATGTTTGGTAT 506 Query 9511 GGACGGTGGCGTCGGTACGCAAGAGGAGAACACTGAGAGACACACCACTGAAGATGTGTC 9570 |||||| | || ||| | || || ||||| ||||||||||| |||||||| Sbjct 505 GGACGGCAGTGTTAGTAACAAGGAAGAAAACACGGAGAGACACACAGTGGAAGATGTCAA 446 Query 9571 CACCGACATGCACACTCTGCTAGGTGTGCGTAAC 9604 | ||||||||| |||| || ||| |||| ||| Sbjct 445 TAGAGACATGCACTCTCTCCTGGGTATGCGCAAC 412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 32060791530416