Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_017970.1 Length=10731 Score E Sequences producing significant alignments: (Bits) Value seq4616 172 4e-39 >seq4616 Length=1066 Score = 172 bits (190), Expect = 4e-39 Identities = 283/408 (69%), Gaps = 0/408 (0%) Strand=Plus/Minus Query 9975 ACAGTTTAAGGCATGGTATGAAGGTGTGAACGGTGATTATGGAGTAACTGATGCTGAAAT 10034 ||| ||| || |||||||| || |||| ||||||||| | | |||| |||||| Sbjct 946 ACAATTTGAGAAGTGGTATGAGGGAGTGAGGAATGATTATGGCCTTAATGATAATGAAAT 887 Query 10035 GAGCATACTCCTTAATGGCCTCACGGTTTGGTGTATTGAGAATGGTACATCACCGAAAAT 10094 | | | || ||||| | | |||||||||||| |||||||||||||| || | || Sbjct 886 GCAAGTGATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACAT 827 Query 10095 TAATGGAATGTGGGTGATGATGGACGGAGAAGAACAAGTAACTTATCCAATAAAACCTCT 10154 ||| | ||||| |||||||| || ||| ||||| ||||||||| || ||| | Sbjct 826 ATCTGGTGTCTGGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTT 767 Query 10155 ATTGGATCATGCTGTCCCCACATTTAGACAGATAATGACACACTTCAGCGACATAGCTGA 10214 | || |||||| || ||||||| || || ||| | ||||| || || || || Sbjct 766 GATTGAGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGA 707 Query 10215 AGCGTACATTGAAAAGAGAAACAGGATAAAGGCCTATATGCCAAGGTATGGCCTACAGAG 10274 ||| ||||||| |||||||| | || || ||||| ||||||| | |||| Sbjct 706 AGCATACATTGCGAAGAGAAATGCTACTGAGAGGTACATGCCGCGGTATGGAATCAAGAG 647 Query 10275 GAATTTGACTGATATGAGTCTTGCGCGGTATGCATTTGATTTCTATGAACTCCACTCAAA 10334 ||||||||||| || || || || | || || || || |||||||| | | || || Sbjct 646 AAATTTGACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAA 587 Query 10335 CACACCAGTAAGAGCAAGGGAGGCACATATGCAAATGAAAGCAGCAGC 10382 ||||| | || || | || || || ||||| ||||| || ||||| Sbjct 586 AACACCTGATAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGC 539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34217160504720