Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_017977.1 Length=9908 Score E Sequences producing significant alignments: (Bits) Value seq4616 152 3e-33 >seq4616 Length=1066 Score = 152 bits (168), Expect = 3e-33 Identities = 242/342 (71%), Gaps = 10/342 (3%) Strand=Plus/Minus Query 9202 GATATATCGAACACTCGTTCAACACAACAACAGTTCAACACATGGTTTAGGCGAGTTATG 9261 || || || ||||||||| | || || ||| || | | |||| | | |||| | | Sbjct 975 GACATTTCTAACACTCGTGCCACTCATTCACAATTTGAGAAGTGGTATGAGGGAGTGAGG 916 Query 9262 GAAGCATATGGA---AGTGATATAGAAGGGATGAAATTGATCACAAATGGTCTGATGGTT 9318 | | ||||| | ||||| ||| ||| || |||| ||||||| |||||||| Sbjct 915 AATGATTATGGCCTTAATGATAATGAA---ATGCAAGTGATGCTAAATGGTTTGATGGTT 859 Query 9319 TGGTGTATTGAGAATGGGACTTCAATGAACTTGAAAGGCAATTGGGTAATGATGGATGGG 9378 |||||||| |||||||| || || || | || ||||| |||||||||||| Sbjct 858 TGGTGTATCGAGAATGGTACATCTCCAGACATATCTGGTGTCTGGGTTATGATGGATGGG 799 Query 9379 GAAACACAAGTCGAATATCCAATTTCACCTTT-ATTG-GAATTCGCTCAGCCTACATTTA 9436 ||||| ||||| || |||||||| ||||| |||| | || ||| || |||||| Sbjct 798 GAAACCCAAGTTGATTATCCAATCAAGCCTTTGATTGAGCAT--GCTACTCCGTCATTTA 741 Query 9437 GGCAAATAATGATGCACTTCAGTGACCTGGCTGAAGCATATATTGAGAAGAGAAATGTTA 9496 ||||||| ||| ||||| ||| || ||| |||||||| |||| ||||||||||| || Sbjct 740 GGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCATACATTGCGAAGAGAAATGCTA 681 Query 9497 CTGAACGGTATATGCCACGCTACGGCCTCCAAAGGAATCTGA 9538 |||| |||| ||||| || || || || | || ||| ||| Sbjct 680 CTGAGAGGTACATGCCGCGGTATGGAATCAAGAGAAATTTGA 639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 31584086816512