Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_018093.1 Length=10798 Score E Sequences producing significant alignments: (Bits) Value seq4616 233 1e-57 >seq4616 Length=1066 Score = 233 bits (258), Expect = 1e-57 Identities = 363/517 (70%), Gaps = 10/517 (2%) Strand=Plus/Minus Query 10010 TTTCAAATACTCGAGCAACACAGGAACAATTTAATGCTTGGTACGAGGGTGTCAGGGAAG 10069 |||| || ||||| || || || ||||||| | ||||| ||||| || ||| | | Sbjct 971 TTTCTAACACTCGTGCCACTCATTCACAATTTGAGAAGTGGTATGAGGGAGTGAGGAATG 912 Query 10070 ATTATGGAGTGAATGATGAGCAAATGGGGATATTGCTCAATGGGTTAATGGTTTGGTGCA 10129 ||||||| | |||||| | ||||| | |||| ||||| || ||||||||||| | Sbjct 911 ATTATGGCCTTAATGATAATGAAATGCAAGTGATGCTAAATGGTTTGATGGTTTGGTGTA 852 Query 10130 TCGAGAATGGAACATCCCCGAATATTAATGGAATGTGGGTCATGATGGATGGTGATGAAC 10189 |||||||||| ||||| || | || ||| | ||||| ||||||||||| || | Sbjct 851 TCGAGAATGGTACATCTCCAGACATATCTGGTGTCTGGGTTATGATGGATGGGGAAACCC 792 Query 10190 AAGTTACATATCCAATAAAACCTCTATTGGATCATGCTGTCCCCACATTTAGGCAGATAA 10249 ||||| |||||||| || ||| | | || |||||| || |||||||||| || | Sbjct 791 AAGTTGATTATCCAATCAAGCCTTTGATTGAGCATGCTACTCCGTCATTTAGGCAAATTA 732 Query 10250 TGACACACTTTAGCGACATCGCTGAAGCGTATATTGAAAAGCGCAATAGGATCAAGGCAT 10309 || | |||||||| || || ||||| || |||| ||| | ||| | || | Sbjct 731 TGGCTCACTTTAGTAACGCGGCAGAAGCATACATTGCGAAGAGAAATGCTACTGAGAGGT 672 Query 10310 ACATGCCGAGGTATGGTCTACAACGAAACTTGACTGATATGAGTCTTGCGCGATATGCGT 10369 |||||||| ||||||| | | |||| |||||||| || || || || |||| || | Sbjct 671 ACATGCCGCGGTATGGAATCAAGAGAAATTTGACTGACATTAGCCTCGCTAGATACGCTT 612 Query 10370 TCGATTTCTATGAGCTGCACTCGAACACTCCTGTTCGGGCCAGAGAGGCACATATGCAAA 10429 |||| ||||||||| || | ||||| || |||| | |||| | || || || ||||| | Sbjct 611 TCGACTTCTATGAGGTGAATTCGAAAACACCTGATAGGGCTCGCGAAGCTCACATGCAGA 552 Query 10430 TGAAAGCAGCAGCACT---TAAGA--ACGCACAAAATCGGTTGTTTGGTTTGGACGGAAA 10484 |||| || ||||| || || | | | ||||| |||||||| ||||||| | Sbjct 551 TGAAGGCTGCAGCGCTGCGAAACACCAGTCGCAAAA-----TGTTTGGTATGGACGGCAG 497 Query 10485 CGTCTCCACGCAGGAAGAAGATACGGAGAGGCACACA 10521 || | |||||||| | |||||||| |||||| Sbjct 496 TGTTAGTAACAAGGAAGAAAACACGGAGAGACACACA 460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 34431517657952