Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_018176.1 Length=9630 Score E Sequences producing significant alignments: (Bits) Value seq4616 154 9e-34 >seq4616 Length=1066 Score = 154 bits (170), Expect = 9e-34 Identities = 299/436 (69%), Gaps = 4/436 (1%) Strand=Plus/Minus Query 8961 ATGTTGAATGGGTTTATGGTCTGGTGTATTGAGAATGGAACATCTCCAAATCTGAATGGA 9020 ||| | ||||| || ||||| |||||||| |||||||| ||||||||| | | ||| Sbjct 879 ATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCTGGT 820 Query 9021 GAGTGGACAATGATGGATGGAGATGAGCAAGTTACATATCCATTACGTCCAATAGTTGAA 9080 | ||| ||||||||||| || |||||| |||||| | || | |||| Sbjct 819 GTCTGGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTGATTGAG 760 Query 9081 AATGCTCAGCCAACTCTAAGACAAATAATGGCACATTTTTCTGATGCAGCTGAAGCATAT 9140 ||||| || | | || ||||| ||||| || ||| | | || || |||||||| Sbjct 759 CATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCATAC 700 Query 9141 ATAGTTATGAGAAACGCAAAAGAACCATACATGCCGCGATATGGTTTAAAGAGAAACTTG 9200 || | | |||||| || | || ||||||||||| ||||| | |||||||| ||| Sbjct 699 ATTGCGAAGAGAAATGCTACTGAGAGGTACATGCCGCGGTATGGAATCAAGAGAAATTTG 640 Query 9201 CGTGACAAATCGCTAGCTCGATTTATGTTTGATTTCTATGTCATTACATCAAAGACTCCT 9260 ||||| || ||| ||| || || ||||||| | | || || || ||| Sbjct 639 ACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAACACCT 580 Query 9261 GATCGAGCGAGAGAAGCGCATTTGCAAACAAAGGCGGCAGCGCTACGTACCACACAGAAT 9320 ||| | || | ||||| || |||| | ||||| |||||||| || | ||| ||| Sbjct 579 GATAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCTGCGAAACAC-CAGTCG 521 Query 9321 -AAAATGTTTGGTTTGGATGGTAGTGTTGGGAACAGTGAGGAGAGTACAGAGAGGCATAC 9379 |||||||||||| |||| || |||||| | |||| || || | || ||||| || || Sbjct 520 CAAAATGTTTGGTATGGACGGCAGTGTTAGTAACAAGGAAGAAAACACGGAGAGACACAC 461 Query 9380 TAGT-GAGGATGTGAA 9394 ||| || ||||| || Sbjct 460 -AGTGGAAGATGTCAA 446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30694664598624