Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_018833.1 Length=9544 Score E Sequences producing significant alignments: (Bits) Value seq4616 158 7e-35 >seq4616 Length=1066 Score = 158 bits (174), Expect = 7e-35 Identities = 239/340 (70%), Gaps = 0/340 (0%) Strand=Plus/Minus Query 8839 ATGGACTTATGGTTTGGTGCATAGAAAACGGAACTTCGCCGAACATAAACGGCGTTTGGA 8898 |||| | ||||||||||| || || || || || || || ||||| || || ||| Sbjct 872 ATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCTGGTGTCTGGG 813 Query 8899 CGATGATGGATGGTGAGACACAAGTCACCTACCCATTAAAGCCTGTGGTTGAAAACGCAT 8958 ||||||||||| || || ||||| || ||| | |||||| || |||| | || Sbjct 812 TTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTGATTGAGCATGCTA 753 Query 8959 CACCAACACTCAGGCAAATCATGCACCATTTTAGTGATGCGGCTGAAGCATACATAGAGT 9018 | || || | |||||||| ||| || |||||| | ||||| ||||||||||| | | Sbjct 752 CTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCATACATTGCGA 693 Query 9019 ATCGAAATTCTAAGGAAAGATACATGCCACGATATGGACTTCAGCGAAATCTGACCGACT 9078 | ||||| ||| || || |||||||| || |||||| | || ||||| |||| ||| Sbjct 692 AGAGAAATGCTACTGAGAGGTACATGCCGCGGTATGGAATCAAGAGAAATTTGACTGACA 633 Query 9079 TCAACTTAGCTCGTTATGCATTTGATTTTTATGAAGTTACTTCGAAGACAACAGCACGAG 9138 | | | | ||| | || || || || || ||||| || | |||||| ||| | | | | Sbjct 632 TTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAACACCTGATAGGG 573 Query 9139 CAAAGGAGGCCCATATGCAGATGAAAGCAGCAGCAGTGCG 9178 | || || || ||||||||||| || ||||| |||| Sbjct 572 CTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCTGCG 533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30419519595968