Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_019409.1 Length=9445 Score E Sequences producing significant alignments: (Bits) Value seq4616 215 3e-52 >seq4616 Length=1066 Score = 215 bits (238), Expect = 3e-52 Identities = 436/639 (68%), Gaps = 6/639 (1%) Strand=Plus/Minus Query 8527 GACAAGATGATGCTACCAAAAGTGCGAGGAAAGGCAGTCCTCAATCTGCAGCACCTTATC 8586 || |||||| | ||||| | | | || ||| | ||||| ||| | | || ||| | Sbjct 1056 GATAAGATGGTTCTACCGAGAATTAAGGGGAAGACTGTCCTTAATTTAAATCATCTTCTT 997 Query 8587 CAATATAGCCCTGAGCAAACAGAAATTTCAAACACAAGGGCGACTCGCACACAATTTGAT 8646 || || | || | |||| || ||||| ||||| | || |||| |||||||||| Sbjct 996 CAGTACAATCCGCAACAAATTGACATTTCTAACACTCGTGCCACTCATTCACAATTTGAG 937 Query 8647 CATTGGTATGATAAGGTAAGAGAAAG-TTATGGTGTAACTGATGAGCAGATGTCAGTTAT 8705 | |||||||| || || ||| | |||||| | | |||| | | ||| ||| || Sbjct 936 AAGTGGTATGAGGGAGTGAG-GAATGATTATGGCCTTAATGATAATGAAATGCAAGTGAT 878 Query 8706 ACTAAACGGCTTAATGGTTTGGTGCATCGAAAATGGGACATCACCAAATTTACAAGGCAA 8765 ||||| || || ||||||||||| ||||| ||||| ||||| ||| | || || Sbjct 877 GCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCTGGTGT 818 Query 8766 TTGGACTATGATGGATGGAGAGGAACAGGTTGAATATCCATTGCAGCCAGTACTTGAGAA 8825 ||| |||||||||||| || || ||||| |||||| | |||| | ||||| | Sbjct 817 CTGGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTGATTGAGCA 758 Query 8826 TGCGCAACCAACTTTTCGACAAATTATGGCGCATTTCTCAAACGCAGCCGAGGCGTATAT 8885 ||| || | ||| | ||||||||||| || || ||||| || || || || || Sbjct 757 TGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCATACAT 698 Query 8886 TGAGAAAAGAAACTCGGAACAAAGGTACATGCCAAGGTATGGCAGTCAA-CGAAATCTGA 8944 || ||| ||||| | | ||||||||||| ||||||| | |||| ||||| ||| Sbjct 697 TGCGAAGAGAAATGCTACTGAGAGGTACATGCCGCGGTATGG-AATCAAGAGAAATTTGA 639 Query 8945 ACGACTACAGTTTAGCTCGCTATGCATTTGACTTTTATGAGATGACATCTCGAACTCCTA 9004 ||| || | ||| | || || || ||||| |||||| ||| || ||| ||| Sbjct 638 CTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAACACCTG 579 Query 9005 ACAGGGCGCGAGAAACACATATACAAATGAAAGCGGCGGCTCTTCGAAACACCAAGACG- 9063 | ||||| || ||| | || || || ||||| || || || || ||||||||| || || Sbjct 578 ATAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCTGCGAAACACC-AGTCGC 520 Query 9064 AAGTTGTTTGGTTTGGATGGAAAAGTGGGTACCGAAGAAGAGGACACGGAACGGCACACG 9123 || |||||||| |||| || | || ||| | | ||||| ||||||| | ||||| Sbjct 519 AAAATGTTTGGTATGGACGGCAGTGTTAGTAACAAGGAAGAAAACACGGAGAGACACACA 460 Query 9124 GCAAGCGATGTTCGTCGTGACATGCATTCACTGCTAGGT 9162 | ||||| | | |||||||| || || || ||| Sbjct 459 GTGGAAGATGTCAATAGAGACATGCACTCTCTCCTGGGT 421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30102782906864