Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_019412.1 Length=9538 Score E Sequences producing significant alignments: (Bits) Value seq4616 158 7e-35 >seq4616 Length=1066 Score = 158 bits (174), Expect = 7e-35 Identities = 321/473 (68%), Gaps = 22/473 (5%) Strand=Plus/Minus Query 8928 AATGGACTCATGGTTTGGTGTATTGAGAACGGAACCTCTCCAAACATTAACGGATTTTGG 8987 ||||| | |||||||||||||| ||||| || || |||||| |||| || | ||| Sbjct 873 AATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCTGGTGTCTGG 814 Query 8988 TATATGATTGAGGATGGGGAA---CAAATAAAATTTCCGTTAAAACCAATTGTTGAGAAT 9044 |||||| |||||||||| ||| | | | ||| | || || | ||||| || Sbjct 813 GTTATGAT---GGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTGATTGAGCAT 757 Query 9045 GCAAAACCTACACTTCGGCAGATCATGGCACACTTCAGTGATTTGGCTGAGGCATACATT 9104 || | || || || |||| || ||||| ||||| ||| | ||| || ||||||||| Sbjct 756 GCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCATACATT 697 Query 9105 GAAAAGCGCAATGCGAA-GAAAGCATATGTGCCAGGCTACGGACTAAAGCGGAATCTCAA 9163 | ||| | ||||| | || || || |||| | || ||| | ||| | ||| | | Sbjct 696 GCGAAGAGAAATGCTACTGAGAGG-TACATGCCGCGGTATGGAATCAAGAGAAATTTGAC 638 Query 9164 TGA--TTA--CTCACTAGCACGTTATGCTTTTGATTTCTATGAGATCACATCAAAGACTC 9219 ||| ||| ||| |||| || ||||| || ||||||||| | | || || || | Sbjct 637 TGACATTAGCCTCGCTAGA----TACGCTTTCGACTTCTATGAGGTGAATTCGAAAACAC 582 Query 9220 CAGTACGCGCACGTGAGGCACACATGCAGATGAAAGCAGCAGCTCTGCGGAACACTAGAA 9279 | | | || || || || |||||||||||||| || ||||| ||||| ||||| || Sbjct 581 CTGATAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCTGCGAAACACCAG-- 524 Query 9280 CTCG---TCTTTTTGGTCTGGATGGCTCTGTTGGGAATAATGATGAAAACANNNNNNNNN 9336 ||| | |||||| |||| ||| |||| | || || || ||||||| Sbjct 523 -TCGCAAAATGTTTGGTATGGACGGCAGTGTTAGTAACAAGGAAGAAAACACGGAGAGAC 465 Query 9337 NNNCGAGCGATGATGTGAACAGAGACATGCACTCTCTCCTTGGGGTGCGTAAC 9389 | || ||||| || |||||||||||||||||||| || |||| ||| Sbjct 464 ACACAGTGGAAGATGTCAATAGAGACATGCACTCTCTCCTGGGTATGCGCAAC 412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30400323432992