Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_020072.1 Length=9621 Score E Sequences producing significant alignments: (Bits) Value seq4616 206 2e-49 >seq4616 Length=1066 Score = 206 bits (228), Expect = 2e-49 Identities = 402/591 (68%), Gaps = 2/591 (0%) Strand=Plus/Minus Query 8783 CATCTGCTGAACTACAAACCAGAACAACATGATATCTCAAACACAAGGGCCACACACCAA 8842 ||||| || | ||||| || ||||| ||| || || ||||| | ||||| || | Sbjct 1005 CATCTTCTTCAGTACAATCCGCAACAAATTGACATTTCTAACACTCGTGCCACTCATTCA 946 Query 8843 CAATTTGAACAGTGGCACAATCGTGTACGAGATGCTTATGAAGTTACTGATGAACAGATG 8902 |||||||| ||||| | | | || | ||| ||||| ||| |||| | | ||| Sbjct 945 CAATTTGAGAAGTGGTATGAGGGAGTGAGGAATGATTATGGCCTTAATGATAATGAAATG 886 Query 8903 CAGATAATCTTGAATGGATTAATGGTTTGGTGTATCGAAAATGGTACATCACCAAACATA 8962 || | || | ||||| || ||||||||||||||||| ||||||||||| ||| ||||| Sbjct 885 CAAGTGATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATA 826 Query 8963 CATGGTGTCTGGACTATGATGGATGGGGAGGAACAGGTTGAGTATGCATTAAAGCCCATC 9022 |||||||||| ||||||||||||||| || ||||| ||| || | ||||| | Sbjct 825 TCTGGTGTCTGGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTG 766 Query 9023 ATTGAAAATGCTCAACCCACATTTCGCCAAATAATGGCGCATTTTAGCGATCTAGCGGAG 9082 ||||| ||||| || ||||| | ||||| ||||| || ||||| | || || Sbjct 765 ATTGAGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAA 706 Query 9083 GCTTATATTGAAATGAGGAACAGGGATCGCG-CCTACATGCCACGTTACGGGCTACAGCG 9141 || || |||| | || ||| | | | | |||||||| || || || | || | Sbjct 705 GCATACATTGCGAAGA-GAAATGCTACTGAGAGGTACATGCCGCGGTATGGAATCAAGAG 647 Query 9142 CAATCTTACTGACATGAGTCTGAGCCGCTATGCATTTGACTTTTACGAGGTTACTCCGCG 9201 ||| | |||||||| || || | || || || ||||| || ||||| | | || Sbjct 646 AAATTTGACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAA 587 Query 9202 GACGCCAACCCGTGCTCGTGAAGCTCATATGCAGATGAAAGCTGCAGCAATTCGAAACAA 9261 || || | ||||| |||||||| ||||||||||| |||||||| | ||||||| Sbjct 586 AACACCTGATAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCTGCGAAACAC 527 Query 9262 CACAACGAAGTTATTTGGTCTGGATGGGAATGTTTCAACTGCTGAAGAGGATACCGAACG 9321 || || | |||||| |||| || | |||| | ||||| | || || | Sbjct 526 CAGTCGCAAAATGTTTGGTATGGACGGCAGTGTTAGTAACAAGGAAGAAAACACGGAGAG 467 Query 9322 TCACACGGCACAAGACGTTAACAGAGGTATGCACACATTACTTGGTGTGCG 9372 ||||| | |||| || || |||| |||||| | | || ||| |||| Sbjct 466 ACACACAGTGGAAGATGTCAATAGAGACATGCACTCTCTCCTGGGTATGCG 416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30665870354160