Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_020105.1 Length=9796 Score E Sequences producing significant alignments: (Bits) Value seq4616 170 1e-38 >seq4616 Length=1066 Score = 170 bits (188), Expect = 1e-38 Identities = 365/538 (68%), Gaps = 8/538 (1%) Strand=Plus/Minus Query 8882 ACAGATTGATATATCAAATGCGCGCTCCACACAAAGTCAATTTGACAATTGGTATTCAGA 8941 ||| ||||| || || || | || |||| || |||||||| || |||||| | Sbjct 982 ACAAATTGACATTTCTAACACTCGTGCCACTCATTCACAATTTGAGAAGTGGTATGAGGG 923 Query 8942 AGTGCAAAAAGCATATGATATACAAGACTCTGAGATGCAAACCACAATGAATGGATTAAT 9001 |||| || | |||| | | || ||| |||||| | | ||||| || || Sbjct 922 AGTGAGGAATGATTATGGCCTTAATGATAATGAAATGCAAGTGATGCTAAATGGTTTGAT 863 Query 9002 GGTGTGGTGCATCGAGAATGGAACATCACCGAACATAAATGGAGTTTGGACCATGATGGA 9061 ||| ||||| ||||||||||| ||||| || ||||| ||| || ||| |||||||| Sbjct 862 GGTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCTGGTGTCTGGGTTATGATGGA 803 Query 9062 AGGAGAAGAGCAGGTTGAGTTCCCATTGAAACCAGTCATTGAGAACGCGAAACCGTCTTT 9121 || ||| || ||||| | ||| | || || | |||||| | || | ||||| || Sbjct 802 TGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTGATTGAGCATGCTACTCCGTCATT 743 Query 9122 TAGGCAGATCATGGCACACTTTTCTGATGTTGCTGAAGCTTATATAGAGATGAGAAATAA 9181 |||||| || ||||| |||||| | | | || ||||| || || | || ||||||| Sbjct 742 TAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCATACATTGCGAAGAGAAAT-- 685 Query 9182 GCAA--GAACCATATATGCCACGGTATGGTTTGGTGCGAAATCTGCGAGATATGAGTCTG 9239 || | || || ||||| |||||||| | | ||||| || || || || || Sbjct 684 GCTACTGAGAGGTACATGCCGCGGTATGGAATCAAGAGAAATTTGACTGACATTAGCCTC 625 Query 9240 GCCCGTTATGCTTTTGACTTTTACGAGGTCACATCTCGCACATCCGTCCGCGCTCGTGAA 9299 || | || ||||| ||||| || ||||| | || ||| | | | ||||| ||| Sbjct 624 GCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAACACCTGATAGGGCTCGCGAA 565 Query 9300 GCCCACACTCAGATGAAGGCTGCGGCGTTG-AAATCATCTCAAACAAGAATGTTTGGACT 9358 || |||| |||||||||||||| ||| || || || | ||| ||||||||| | Sbjct 564 GCTCACATGCAGATGAAGGCTGCAGCGCTGCGAAACACCAGTCGCAA-AATGTTTGGTAT 506 Query 9359 GGATGGTGGCATAAGTACACAA-GAGGAGAACACAGAGAGGCACACCACTGAAGATGT 9415 ||| || | | |||| |||| || || ||||| ||||| ||||| |||||||| Sbjct 505 GGACGGCAGTGTTAGTA-ACAAGGAAGAAAACACGGAGAGACACACAGTGGAAGATGT 449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 31225758440960