Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_020896.1 Length=10081 Score E Sequences producing significant alignments: (Bits) Value seq4616 105 4e-19 >seq4616 Length=1066 Score = 105 bits (116), Expect = 4e-19 Identities = 334/518 (64%), Gaps = 0/518 (0%) Strand=Plus/Minus Query 9357 TGGTATGAAGGCGTGAAGAATGCTTACGAAGTAGATGATCAGCAGATGTCAATCTTGATG 9416 |||||||| || |||| ||||| ||| | | ||||| | | ||| | | || | Sbjct 933 TGGTATGAGGGAGTGAGGAATGATTATGGCCTTAATGATAATGAAATGCAAGTGATGCTA 874 Query 9417 AATGGACTTGTTGTATGGTGTATAGAGAACGGGACATCTCCAAATATCAATGGTGATTGG 9476 ||||| | | || |||||||| ||||| || ||||||||| | || ||||| ||| Sbjct 873 AATGGTTTGATGGTTTGGTGTATCGAGAATGGTACATCTCCAGACATATCTGGTGTCTGG 814 Query 9477 GTAATGATGGACGGAGACACACAAGTATCATACCCAATAAAGCCACTTATAGATTTCGCA 9536 || |||||||| || || || ||||| || ||||| ||||| | || || || Sbjct 813 GTTATGATGGATGGGGAAACCCAAGTTGATTATCCAATCAAGCCTTTGATTGAGCATGCT 754 Query 9537 GCACCAACGTTTCGTCAAATAATGAAACATTTTAGCGATGTTGCAGAAGCCTATATACAA 9596 | || | ||| | ||||| ||| || ||||| | | |||||||| || || Sbjct 753 ACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTAACGCGGCAGAAGCATACATTGCG 694 Query 9597 ATGCGCAATGCAGAGCAACCATACATGCCAAGATATGGTTTGCAACGGAACTTAACAGAT 9656 | | | ||||| | |||||||| | ||||| | | | || || || || Sbjct 693 AAGAGAAATGCTACTGAGAGGTACATGCCGCGGTATGGAATCAAGAGAAATTTGACTGAC 634 Query 9657 ATGTCTCTGGCCCGATATGCTTTTGATTTTTACGAGGTTACATCACGCACACCCATTCGT 9716 || || || |||| ||||| || || || ||||| | || ||||| | | Sbjct 633 ATTAGCCTCGCTAGATACGCTTTCGACTTCTATGAGGTGAATTCGAAAACACCTGATAGG 574 Query 9717 GCTAAGGAGGCATACTTCCAGATGAAGGCTGCAGCGCTCACAAATACACATCATCGGCTG 9776 ||| || || || | |||||||||||||||||||| ||| || || || Sbjct 573 GCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGCGCTGCGAAACACCAGTCGCAAAATG 514 Query 9777 TTCGGTTTGGATGGAAATGTTTCAACCACTGAGGAAAACACCGAGCGGCATACTGCAACA 9836 || ||| |||| || | |||| | || || |||||||| ||| | || || | | Sbjct 513 TTTGGTATGGACGGCAGTGTTAGTAACAAGGAAGAAAACACGGAGAGACACACAGTGGAA 454 Query 9837 GATGTGGACCGGAACATACACACACTACTTGGAATGCG 9874 ||||| | | |||| ||| | || || || ||||| Sbjct 453 GATGTCAATAGAGACATGCACTCTCTCCTGGGTATGCG 416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 32137576182320