Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_021065.1 Length=9718 Score E Sequences producing significant alignments: (Bits) Value seq4616 199 2e-47 >seq4616 Length=1066 Score = 199 bits (220), Expect = 2e-47 Identities = 416/614 (68%), Gaps = 12/614 (2%) Strand=Plus/Minus Query 8969 AATTTAGAGCATTTATTGGATTACAAACCAGAACAATATGATTTATCCAATACACGAGCA 9028 |||||| | ||| | | | ||||| || ||||| ||| | || || || || || Sbjct 1014 AATTTAAATCATCTTCTTCAGTACAATCCGCAACAAATTGACATTTCTAACACTCGTGCC 955 Query 9029 ACGCATCAACAGTTCGATCGGTGGTACGCAGCAGTGA--AATCAGAGTATGAAGCTACAG 9086 || ||| ||| || || |||||| | | ||||| ||| || |||| || | Sbjct 954 ACTCATTCACAATTTGAGAAGTGGTATGAGGGAGTGAGGAAT--GATTATGGCCTTAATG 897 Query 9087 ACGAACAAATGTCTATAATCCTGAATGGGTTGATGGTGTGGTGTGTTGAGAATGGCACAT 9146 | | ||||| | || || ||||| |||||||| |||||| | |||||||| |||| Sbjct 896 ATAATGAAATGCAAGTGATGCTAAATGGTTTGATGGTTTGGTGTATCGAGAATGGTACAT 837 Query 9147 CACCAAATATCAATGGTGTTTGGGTTATGATGGATGGAGACGAGCAAGTCGAGTATCCAT 9206 | ||| | || |||||| ||||||||||||||||| || ||||| || |||||| Sbjct 836 CTCCAGACATATCTGGTGTCTGGGTTATGATGGATGGGGAAACCCAAGTTGATTATCCAA 777 Query 9207 TAAAACCTATAATAGAAAATGCACAACCCACTTTCAGACAAATTATGGCACACTTCAGTA 9266 | || ||| | || || |||| || | || || ||||||||||| ||||| |||| Sbjct 776 TCAAGCCTTTGATTGAGCATGCTACTCCGTCATTTAGGCAAATTATGGCTCACTTTAGTA 717 Query 9267 ACCTAGCAGAGGCATACAT--CGAACTTAGAAACCAATCTTCTCCGTACATGCCACGCTA 9324 || ||||| |||||||| |||| ||||| || ||||||||| || || Sbjct 716 ACGCGGCAGAAGCATACATTGCGAA--GAGAAATGCTACTGAGAGGTACATGCCGCGGTA 659 Query 9325 TGGTTTGCAGCGTAACTTGACCGATATGAGTCTAGCCCGGTTTGCATTTGATTTTTACGA 9384 ||| | || | || ||||| || || || || || | | || || || || || || Sbjct 658 TGGAATCAAGAGAAATTTGACTGACATTAGCCTCGCTAGATACGCTTTCGACTTCTATGA 599 Query 9385 GCTAACATCGAAAACACCGGTGAAAGCACGTGAAGCGCATATGCAAATGAAGGCCGCAGC 9444 | | | ||||||||||| | | || || ||||| || ||||| |||||||| ||||| Sbjct 598 GGTGAATTCGAAAACACCTGATAGGGCTCGCGAAGCTCACATGCAGATGAAGGCTGCAGC 539 Query 9445 TGTCCGCAATACATCCACCAAATTATTTGGGCTAGACGGTAATGTGGGCTTAGC--TGAA 9502 | || || || |||| | ||||| | ||||| | ||| | || | ||| Sbjct 538 GCTGCGAAACACCAGTCGCAAAATGTTTGGTATGGACGGCAGTGTTAG--TAACAAGGAA 481 Query 9503 GAGGATACAGAACGACACACAGTTCATGATGTGAATCGAAACATGCATTCCTTACTCGGA 9562 || | || || |||||||||| | ||||| ||| || ||||||| || | || || Sbjct 480 GAAAACACGGAGAGACACACAGTGGAAGATGTCAATAGAGACATGCACTCTCTCCTGGGT 421 Query 9563 ATGCGTCAGTAAAT 9576 ||||| | ||||| Sbjct 420 ATGCGCAACTAAAT 407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 30976208322272