Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Carica_20papaya_20[genbank_20GCA_5F000150535.1_202008-05-06] 17,764 sequences; 369,781,828 total letters Query= NC_021196.1 Length=9731 Score E Sequences producing significant alignments: (Bits) Value seq4616 170 1e-38 >seq4616 Length=1066 Score = 170 bits (188), Expect = 1e-38 Identities = 411/618 (67%), Gaps = 12/618 (2%) Strand=Plus/Minus Query 8855 GGGAAAATTATTCTTAACCTGGATCATTTGCTTGAGTACAAACCGAATCAGGTTGACTTG 8914 ||||| | | | ||||| | ||||| | ||| ||||||| ||| | || ||||| | Sbjct 1029 GGGAAGACTGTCCTTAATTTAAATCATCTTCTTCAGTACAATCCGCAACAAATTGACATT 970 Query 8915 TTCAATACTCGGGCAACGAAGACACAGTTTACATCATGGTATAATGCAGTCAAGGCTGAG 8974 | || ||||| || || | |||| ||| |||||| | | ||| | | ||| Sbjct 969 TCTAACACTCGTGCCACTCATTCACAATTTGAGAAGTGGTATGAGGGAGTGAGGAATGAT 910 Query 8975 TATGGATTAGAGGATGAGCAGATGGGTGTGGTCATGAATGGCTTCATGGTTTGGTGCATA 9034 ||||| | | ||| | | ||| ||| | | ||||| || ||||||||||| || Sbjct 909 TATGGCCTTAATGATAATGAAATGCAAGTGATGCTAAATGGTTTGATGGTTTGGTGTATC 850 Query 9035 GATAATGGCACATCCCCAGATGTCAATGGGATGTGGGTAATGATGGATGGAGAAGAACAA 9094 || ||||| ||||| ||||| | ||| | ||||| ||||||||||| ||| ||| Sbjct 849 GAGAATGGTACATCTCCAGACATATCTGGTGTCTGGGTTATGATGGATGGGGAAACCCAA 790 Query 9095 GTCGAGTATCCGCTGAAGCCTATTGCGGAGAATGCAAGGCCAACTTTAAGGCAAATCATG 9154 || || ||||| | |||||| | ||| |||| | || | || |||||||| ||| Sbjct 789 GTTGATTATCCAATCAAGCCTTTGATTGAGCATGCTACTCCGTCATTTAGGCAAATTATG 730 Query 9155 CATCACTTTTCAGATGCAGCGGAAGCTTACATCGAAATGAGAAA--CT-CTGAAGGTCCG 9211 ||||||| | || || ||||| ||||| | | |||||| || |||| | | Sbjct 729 GCTCACTTTAGTAACGCGGCAGAAGCATACATTGCGAAGAGAAATGCTACTGAGAG---G 673 Query 9212 TATATGCCTAGATACGGATTATTGAGGAATCTGAGAGACAGGGATCTGGCACGCTATGCT 9271 || ||||| | || ||| | ||| ||| ||| |||| || || | || ||| Sbjct 672 TACATGCCGCGGTATGGAATCAAGAGAAATTTGACTGACATTAGCCTCGCTAGATACGCT 613 Query 9272 TTTGATTTCTATGAGGTGACTTCCAAGACACCAAATAGAGCAAGAGAGGCATTAGCGCAA 9331 || || ||||||||||||| ||| || ||||| |||| || | || || ||| Sbjct 612 TTCGACTTCTATGAGGTGAATTCGAAAACACCTGATAGGGCTCGCGAAGCTCACATGCAG 553 Query 9332 ATGAAGGCTGCAGCTCTCACGGGAGTTAACA---ACAAGTTGTTTGGACCTGATGGCAAT 9388 |||||||||||||| || | || | || ||| ||||||| || |||| | Sbjct 552 ATGAAGGCTGCAGCGCT---GCGAAACACCAGTCGCAAAATGTTTGGTATGGACGGCAGT 496 Query 9389 ATCTCAACCAATGCCGAAAATACTGAGAGGCACACTGCGAGGGACGTGAATCCAAACATG 9448 | | ||| | ||||| || ||||| ||||| | | || || ||| | ||||| Sbjct 495 GTTAGTAACAAGGAAGAAAACACGGAGAGACACACAGTGGAAGATGTCAATAGAGACATG 436 Query 9449 CACACTCTTTTGGGTATG 9466 ||| |||| |||||||| Sbjct 435 CACTCTCTCCTGGGTATG 418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 31017800008720